CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG96790
KRH68501

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G23940.1	KRG96790	AT1G09100.1	21798944
AT5G23940.1	KRH68501	AT1G09100.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38407	Soybean	cytosol	97.1	97.32
VIT_16s0050g00830.t01	Wine grape	cytosol	68.15	68.76
PGSC0003DMT400026230	Potato	cytosol	61.47	68.49
Solyc03g025320.2.1	Tomato	cytosol, nucleus	67.04	66.59
CDY44265	Canola	cytosol	67.04	64.04
Bra029388.1-P	Field mustard	cytosol	67.04	63.24
Bra009716.1-P	Field mustard	cytosol	64.81	62.99
CDX80398	Canola	cytosol	64.14	62.07
CDX88059	Canola	cytosol	64.59	61.7
AT5G23940.1	Thale cress	mitochondrion	65.26	60.54
GSMUA_AchrUn_...	Banana	cytosol	55.46	55.83
VIT_16s0050g00870.t01	Wine grape	cytosol	68.15	51.6
TraesCS1A01G341300.1	Wheat	golgi, unclear	51.22	51.45
Zm00001d031893_P001	Maize	mitochondrion	50.78	51.35
TraesCS1B01G354000.1	Wheat	cytosol	50.78	51.12
TraesCS1D01G343400.1	Wheat	golgi	50.56	50.78
HORVU1Hr1G075900.1	Barley	cytosol	50.56	50.56
Os08t0562500-01	Rice	plastid	49.89	50.34
EES14067	Sorghum	cytosol, peroxisome, plastid	50.78	48.82
KRH40990	Soybean	extracellular	24.05	35.41
KRH52019	Soybean	cytosol	30.96	30.42
KRH52020	Soybean	cytosol	30.73	30.26
KRG97771	Soybean	plastid	31.63	30.02
KRH66032	Soybean	cytosol	31.18	29.98
KRH75833	Soybean	cytosol	31.63	29.96
KRH61317	Soybean	vacuole	26.95	29.88
KRH61321	Soybean	cytosol	30.29	29.57
KRH31113	Soybean	plastid	32.29	29.41
KRH61316	Soybean	cytosol	30.07	29.28
KRH61619	Soybean	cytosol	29.84	29.13
KRH73150	Soybean	cytosol, plastid	30.96	29.08
KRH61320	Soybean	cytosol, plastid	30.96	28.6
KRH14988	Soybean	cytosol, plastid	30.29	28.39
KRH04581	Soybean	cytosol, endoplasmic reticulum	27.62	28.25
KRH40991	Soybean	cytosol	25.84	28.22
KRH61319	Soybean	cytosol, mitochondrion, nucleus	29.4	28.14
KRH04296	Soybean	cytosol	27.62	27.99
KRH57913	Soybean	cytosol	26.73	27.52
KRH61322	Soybean	cytosol	16.7	24.12

Protein Annotations

EMBL:ACUP02010215	EnsemblPlants:KRH08886	EnsemblPlantsGene:GLYMA_16G180500	EntrezGene:100790669	Gene3D:3.30.559.10	GO:GO:0003674
GO:GO:0003824	GO:GO:0016740	GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase
PANTHER:PTHR31896	PANTHER:PTHR31896:SF4	PFAM:PF02458	ProteinID:KRH08886	ProteinID:KRH08886.1	SEG:seg
UniParc:UPI000233AC0D	UniProt:I1MPK1	MapMan:21.9.5.3	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:34105756..34109617

Molecular Weight (calculated)

49952.5 Da

IEP (calculated)

5.263

GRAVY (calculated)

-0.350

Length

449 amino acids

Sequence
(BLAST)

001: MAGEVVKKED SLNLKVTNKS HVQPEEKIGR KEYQLVTFDL PYLAFYYNQK LLFYKGEDFE GMVQKLKVGL GVVLKEFHQL AGKLGKDEEG VFRVEYDDDM
101: LGVEVVEAVV VDDNEIGVDD LTVAEISNTN LKELIPYSGI LNLEGMHRPL LAVQLTKLKD GLAMGLAFNH AVLDGTATWQ FMTSWAEICS GSPSTSAPPF
201: LDRTKARNTR VKLDLSLPEP NGPPTSNGEA KPAPALREKI FKFSESAIDK IKSTVNENPP SDGSKPFSTF QALSSHVWRH VSHARNLKPE DYTVFTVFAD
301: CRKRVDPPMP ENYFGNLIQA IFTVTAVGLL AAHPPQFGAS LIQKAIEAHN AKAIDERNKE WESTPKIFQF KDAGVNCVAV GSSPRFKVYD IDFGWGKPEN
401: VRSGTNNKFD GMIYLYPGKS GGRSIDVELT LEPEAMERLE QDKDFLLEA

Best Arabidopsis Sequence Match ( AT5G23940.1 )
(BLAST)

001: MKIKIMSKTH VKPTKPVLGK KQFHLTTFDL PYLAFYYNQK FLLYKFQNLL DLEEPTFQNE VVENLKDGLG LVLEDFYQLA GKLAKDDEGV FRVEYDAEDS
101: EINGVEFSVA HAADVTVDDL TAEDGTAKFK ELVPYNGILN LEGLSRPLLA VQVTKLKDGL AMGLAFNHAV LDGTSTWHFM SSWAEICRGA QSISTQPFLD
201: RSKARDTRVK LDLTAPKDPN ETSNGEDAAN PTVEPPQLVE KIFRFSDFAV HTIKSRANSV IPSDSSKPFS TFQSLTSHIW RHVTLARGLK PEDITIFTVF
301: ADCRRRVDPP MPEEYFGNLI QAIFTGTAAG LLAAHGPEFG ASVIQKAIAA HDASVIDARN DEWEKSPKIF QFKDAGVNCV AVGSSPRFRV YEVDFGFGKP
401: ETVRSGSNNR FNGMMYLYQG KAGGISIDVE ITLEASVMEK LVKSKEFLLS EEEEEDDGKK LTNGNGHVNG NGNGYVNGNG NGFV

Arabidopsis Description

DCRBAHD acyltransferase DCR [Source:UniProtKB/Swiss-Prot;Acc:Q9FF86]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.