Factsheet for Solyc03g025320.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, mitochondrion
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026230	Potato	cytosol	84.29	94.54
VIT_16s0050g00830.t01	Wine grape	cytosol	66.81	67.87
KRH08886	Soybean	cytosol, nucleus	66.59	67.04
KRH38407	Soybean	cytosol	65.93	66.52
Bra009716.1-P	Field mustard	cytosol	62.83	61.47
CDY44265	Canola	cytosol	63.72	61.28
CDX80398	Canola	cytosol	62.39	60.78
CDX88059	Canola	cytosol	63.05	60.64
Bra029388.1-P	Field mustard	cytosol	63.5	60.29
AT5G23940.1	Thale cress	mitochondrion	63.27	59.09
GSMUA_AchrUn_...	Banana	cytosol	55.53	56.28
TraesCS1A01G341300.1	Wheat	golgi, unclear	50.88	51.45
TraesCS1B01G354000.1	Wheat	cytosol	50.44	51.12
TraesCS1D01G343400.1	Wheat	golgi	50.0	50.56
HORVU1Hr1G075900.1	Barley	cytosol	50.22	50.56
Zm00001d031893_P001	Maize	mitochondrion	49.56	50.45
VIT_16s0050g00870.t01	Wine grape	cytosol	65.93	50.25
Os08t0562500-01	Rice	plastid	49.34	50.11
EES14067	Sorghum	cytosol, peroxisome, plastid	50.44	48.82
Solyc01g107070.2.1	Tomato	cytosol, mitochondrion	13.72	36.47
Solyc05g052670.1.1	Tomato	plastid	31.86	31.24
Solyc05g052680.1.1	Tomato	cytosol, plastid	31.19	30.85
Solyc01g107050.2.1	Tomato	cytosol	11.06	30.3
Solyc09g014280.1.1	Tomato	cytosol, plastid	30.53	30.0
Solyc04g078660.1.1	Tomato	cytosol	29.65	29.91
Solyc08g005890.2.1	Tomato	cytosol	28.76	29.75
Solyc02g062710.1.1	Tomato	cytosol	28.98	28.98
Solyc01g107080.2.1	Tomato	cytoskeleton, cytosol, peroxisome	26.55	28.57
Solyc12g096250.1.1	Tomato	cytosol	26.99	26.87
Solyc02g093180.2.1	Tomato	mitochondrion	26.77	26.71
Solyc04g078350.1.1	Tomato	cytosol	8.63	23.64
Solyc10g055730.1.1	Tomato	cytosol	15.93	23.45

Protein Annotations

MapMan:21.9.5.3	Gene3D:3.30.559.10	InterPro:CAT-like_dom_sf	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009987	GO:GO:0010090	GO:GO:0010143	GO:GO:0016043
GO:GO:0016740	GO:GO:0016747	GO:GO:0030154	GO:GO:0051179	GO:GO:0090626	InterPro:IPR023213
EMBL:JQ070978	UniProt:K4BF05	PFAM:PF02458	PANTHER:PTHR31896	PANTHER:PTHR31896:SF4	EnsemblPlantsGene:Solyc03g025320.2
EnsemblPlants:Solyc03g025320.2.1	InterPro:Transferase	UniParc:UPI0002768AC8	:	:	:

Description

BAHD acyltransferase DCR [Source:Projected from Arabidopsis thaliana (AT5G23940) UniProtKB/Swiss-Prot;Acc:Q9FF86]

Coordinates

chr3:-:2760932..2764000

Molecular Weight (calculated)

50486.1 Da

IEP (calculated)

5.170

GRAVY (calculated)

-0.344

Length

452 amino acids

Sequence
(BLAST)

001: MTKEEIATTN VNILKKSNVK PQKPLGKKEC QLVTFDLPYL AFYYNQKLMV YKLGAESFEE TVEKLKDGLA LVLEDFYQLA GKLGKDDEGV FKVEYDDDMD
101: GVEVIVDEAQ EIQVANLTDH HEGINKFQDL IPYNKILNLE GLHRPLLAVQ LTKLKDGLAM GLAFNHAVLD GTSTWHFMTS WAQLCSGATS ISVPPFLERT
201: KARDTRVKLN LSKPSDAPEH AKSETNGDVS ASVDPPMRDR VFKFSESAID QIKSKVNTNP GEGANNTTPF STFQSLSAHV WLAVTRARQL KPEEYTVYTV
301: FADCRKRVDP PMPESYFGNL IQAIFTVTAA GLLLSNPIEF AAGMIQQAIA KHDAKAIEER NKEWESSPKI FAYKDAGVNC VAVGSSPRFK VYEVDFGWGK
401: AEIVRSGLNN RFDGMVYLYP EKNGGRGIDV EISLEANAME RLEKDKEFLM EA

Best Arabidopsis Sequence Match ( AT5G23940.1 )
(BLAST)

001: MKIKIMSKTH VKPTKPVLGK KQFHLTTFDL PYLAFYYNQK FLLYKFQNLL DLEEPTFQNE VVENLKDGLG LVLEDFYQLA GKLAKDDEGV FRVEYDAEDS
101: EINGVEFSVA HAADVTVDDL TAEDGTAKFK ELVPYNGILN LEGLSRPLLA VQVTKLKDGL AMGLAFNHAV LDGTSTWHFM SSWAEICRGA QSISTQPFLD
201: RSKARDTRVK LDLTAPKDPN ETSNGEDAAN PTVEPPQLVE KIFRFSDFAV HTIKSRANSV IPSDSSKPFS TFQSLTSHIW RHVTLARGLK PEDITIFTVF
301: ADCRRRVDPP MPEEYFGNLI QAIFTGTAAG LLAAHGPEFG ASVIQKAIAA HDASVIDARN DEWEKSPKIF QFKDAGVNCV AVGSSPRFRV YEVDFGFGKP
401: ETVRSGSNNR FNGMMYLYQG KAGGISIDVE ITLEASVMEK LVKSKEFLLS EEEEEDDGKK LTNGNGHVNG NGNGYVNGNG NGFV

Arabidopsis Description

DCRBAHD acyltransferase DCR [Source:UniProtKB/Swiss-Prot;Acc:Q9FF86]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.