Factsheet for Solyc05g052670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069897	Potato	plastid	92.84	93.04
Solyc05g052680.1.1	Tomato	cytosol, plastid	89.59	90.37
VIT_13s0019g03430.t01	Wine grape	cytosol, peroxisome, plastid	72.45	68.58
CDX74815	Canola	cytosol, plastid	63.56	67.51
KRH73150	Soybean	cytosol, plastid	69.85	67.36
AT2G39980.1	Thale cress	cytosol, plastid	69.63	66.6
CDY07045	Canola	peroxisome	64.64	66.22
KRH14988	Soybean	cytosol, plastid	68.76	66.18
CDX93218	Canola	peroxisome	63.99	65.41
CDY24938	Canola	cytosol, plastid	64.64	64.92
Bra004996.1-P	Field mustard	cytosol	67.03	64.51
Bra017041.1-P	Field mustard	cytosol	65.29	64.04
Solyc09g014280.1.1	Tomato	cytosol, plastid	60.52	60.65
GSMUA_Achr10P...	Banana	plastid	48.37	53.22
GSMUA_Achr8P19570_001	Banana	plastid	47.72	52.13
Os05t0449200-01	Rice	plastid	53.15	51.04
Zm00001d042826_P001	Maize	plastid	53.15	50.62
Os01t0854000-01	Rice	plastid	52.93	50.52
GSMUA_AchrUn_...	Banana	plastid	45.12	50.12
EES01771	Sorghum	plastid	53.58	49.9
TraesCS3A01G367900.1	Wheat	plastid	52.49	49.09
TraesCS3D01G360900.1	Wheat	plastid	52.28	48.88
Zm00001d010079_P001	Maize	plastid	52.49	48.59
TraesCS3B01G399600.1	Wheat	plastid	51.84	48.58
Zm00001d012333_P001	Maize	plastid	52.93	47.84
EES19625	Sorghum	plastid	52.71	47.18
TraesCS1A01G278800.1	Wheat	cytosol, plastid	52.49	45.83
TraesCS1B01G287800.1	Wheat	cytosol, plastid	52.28	45.73
HORVU3Hr1G085100.2	Barley	plastid	52.06	44.94
HORVU1Hr1G073330.1	Barley	cytosol	51.84	42.91
TraesCS1D01G278100.1	Wheat	plastid	52.49	42.38
Solyc04g078660.1.1	Tomato	cytosol	40.56	41.74
Solyc01g107070.2.1	Tomato	cytosol, mitochondrion	14.97	40.59
Solyc04g078350.1.1	Tomato	cytosol	14.1	39.39
Solyc08g005890.2.1	Tomato	cytosol	37.09	39.13
Solyc02g093180.2.1	Tomato	mitochondrion	36.88	37.53
Solyc01g107080.2.1	Tomato	cytoskeleton, cytosol, peroxisome	33.19	36.43
Solyc12g096250.1.1	Tomato	cytosol	34.49	35.02
Solyc10g055730.1.1	Tomato	cytosol	22.78	34.2
Solyc02g062710.1.1	Tomato	cytosol	33.41	34.07
Solyc01g107050.2.1	Tomato	cytosol	11.93	33.33
Solyc03g025320.2.1	Tomato	cytosol, nucleus	31.24	31.86

Protein Annotations

EnsemblPlants:Solyc05g052670.1.1	EnsemblPlantsGene:Solyc05g052670.1	Gene3D:3.30.559.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31896	PANTHER:PTHR31896:SF11
PFAM:PF02458	SEG:seg	UniParc:UPI0002765F0C	UniProt:K4C1U8	MapMan:35.1	:

Description

No Description!

Coordinates

chr5:-:62881105..62882490

Molecular Weight (calculated)

51435.6 Da

IEP (calculated)

8.167

GRAVY (calculated)

-0.160

Length

461 amino acids

Sequence
(BLAST)

001: MPSAAAATHV TLLSKSTISP SEKSSLPDLK LSVSDLPMLS VHYIQKGCLF THPPFPISQL ISLLKINLSH TLTRFPPLAG RFVTDSDGYV YINCNDDGVD
101: FVHATATHIC IRDVIGSIDV PHCVNEFFPL DRTVSYRGHF IPLLAVQVTE LADGVFIGCA VNHSVTDGTS FWNFFNTFAE VSRGVKRIVR QPDFTRDSVL
201: ISSSILKLPA DGPKVTFDGD APLRERIFSF SWESIQRLKA KTNNQKLNFD AEINIVKSME KQSNDHLKIK TESAEISSFQ SLCALLWRAV TRARKFPSSK
301: MTTFRMAVNC RHRLQPKLNP LYFGNAIQSI PTYVSAGDVL SHDLRWCAEQ LNKNVKAHDD VMVRKFVGDW EKDPRCFPLG NFDGAMLTMG SSPRFPMYEN
401: DFGWGRPVAV RSGRANKFDG KISAFPGRKG GGSVDLEMIL SPETMEGLES DTEFMQYVTG F

Best Arabidopsis Sequence Match ( AT2G39980.1 )
(BLAST)

001: MPSLEKSVTI ISRNRVFPDQ KSTLVDLKLS VSDLPMLSCH YIQKGCLFTC PNLPLPALIS HLKHSLSITL THFPPLAGRL STSSSGHVFL TCNDAGADFV
101: FAQAKSIHVS DVIAGIDVPD VVKEFFTYDR AVSYEGHNRP ILAVQVTELN DGVFIGCSVN HAVTDGTSLW NFINTFAEVS RGAKNVTRQP DFTRESVLIS
201: PAVLKVPQGG PKVTFDENAP LRERIFSFSR ESIQELKAVV NKKKWLTVDN GEIDGVELLG KQSNDKLNGK ENGILTEMLE SLFGRNDAVS KPVAVEISSF
301: QSLCALLWRA ITRARKLPSS KTTTFRMAVN CRHRLSPKLN PEYFGNAIQS VPTFATAAEV LSRDLKWCAD QLNQSVAAHQ DGRIRSVVAD WEANPRCFPL
401: GNADGASVTM GSSPRFPMYD NDFGWGRPVA VRSGRSNKFD GKISAFPGRE GNGTVDLEVV LSPETMAGIE SDGEFMRYVT NK

Arabidopsis Description

At2g39980/T28M21.14 [Source:UniProtKB/TrEMBL;Acc:O04201]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.