Factsheet for Solyc05g052680.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 4
mitochondrion 1
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069898	Potato	cytosol	94.75	94.75
Solyc05g052670.1.1	Tomato	plastid	90.37	89.59
VIT_13s0019g03430.t01	Wine grape	cytosol, peroxisome, plastid	73.52	68.99
KRH73150	Soybean	cytosol, plastid	71.12	67.99
CDX74815	Canola	cytosol, plastid	63.68	67.05
AT2G39980.1	Thale cress	cytosol, plastid	70.46	66.81
KRH14988	Soybean	cytosol, plastid	69.58	66.39
CDY07045	Canola	peroxisome	64.55	65.56
CDX93218	Canola	peroxisome	63.9	64.75
CDY24938	Canola	cytosol, plastid	64.77	64.49
Bra004996.1-P	Field mustard	cytosol	67.18	64.09
Bra017041.1-P	Field mustard	cytosol	65.21	63.4
Solyc09g014280.1.1	Tomato	cytosol, plastid	62.14	61.74
GSMUA_Achr10P...	Banana	plastid	49.02	53.46
GSMUA_Achr8P19570_001	Banana	plastid	48.58	52.61
Os01t0854000-01	Rice	plastid	54.27	51.35
Os05t0449200-01	Rice	plastid	53.61	51.04
Zm00001d042826_P001	Maize	plastid	53.83	50.83
EES01771	Sorghum	plastid	54.49	50.3
GSMUA_AchrUn_...	Banana	plastid	45.51	50.12
TraesCS3D01G360900.1	Wheat	plastid	53.39	49.49
TraesCS3A01G367900.1	Wheat	plastid	53.39	49.49
Zm00001d010079_P001	Maize	plastid	53.61	49.2
TraesCS3B01G399600.1	Wheat	plastid	52.95	49.19
Zm00001d012333_P001	Maize	plastid	54.27	48.63
EES19625	Sorghum	plastid	54.05	47.96
TraesCS1A01G278800.1	Wheat	cytosol, plastid	53.17	46.02
TraesCS1B01G287800.1	Wheat	cytosol, plastid	52.95	45.92
HORVU3Hr1G085100.2	Barley	plastid	52.95	45.32
HORVU1Hr1G073330.1	Barley	cytosol	52.74	43.27
TraesCS1D01G278100.1	Wheat	plastid	53.17	42.56
Solyc04g078660.1.1	Tomato	cytosol	40.92	41.74
Solyc01g107070.2.1	Tomato	cytosol, mitochondrion	15.1	40.59
Solyc08g005890.2.1	Tomato	cytosol	38.51	40.27
Solyc04g078350.1.1	Tomato	cytosol	14.0	38.79
Solyc02g093180.2.1	Tomato	mitochondrion	36.32	36.64
Solyc12g096250.1.1	Tomato	cytosol	36.1	36.34
Solyc01g107080.2.1	Tomato	cytoskeleton, cytosol, peroxisome	33.04	35.95
Solyc01g107050.2.1	Tomato	cytosol	12.47	34.55
Solyc02g062710.1.1	Tomato	cytosol	33.26	33.63
Solyc10g055730.1.1	Tomato	cytosol	22.54	33.55
Solyc03g025320.2.1	Tomato	cytosol, nucleus	30.85	31.19

Protein Annotations

EnsemblPlants:Solyc05g052680.1.1	EnsemblPlantsGene:Solyc05g052680.1	Gene3D:3.30.559.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0016740
GO:GO:0016747	InterPro:CAT-like_dom_sf	InterPro:IPR023213	InterPro:Transferase	PANTHER:PTHR31896	PANTHER:PTHR31896:SF11
PFAM:PF02458	UniParc:UPI0002765F0D	UniProt:K4C1U9	MapMan:35.1	:	:

Description

No Description!

Coordinates

chr5:-:62893729..62895102

Molecular Weight (calculated)

50901.2 Da

IEP (calculated)

7.924

GRAVY (calculated)

-0.088

Length

457 amino acids

Sequence
(BLAST)

001: MTTPPVALVS KCTVFPSEKS SLPDLKLSVS DLPMLSVHYI QKGCLFTRPP FPIPQLISLL KINLSHTLTR FPPLAGRFVT DSDGYVYITC NDDGVDFVHA
101: SATHICIRDV IGSIDVPHCV NEFFPLDRTV SYRGHFIPLL AVQVTELADG VFIGCAVNHS VTDGTSIWNF FNTFAEVSRG VKRIVRQPDF TRDSVLISNS
201: VLKLPADGPK VTFAGDAPLR ERIFSFSRES IQRLKAKTNN QKLNFDGGIN IVELIAKQSN DHLKIKTETA EISSFQSLCA LLWRAVTRAR KFPPSKMTTF
301: RMAVNCRHRL QPKLNPLYFG NAIQSIPIYA SAGEVLANDL YWCAEQLTKN VNAHDDVMVR KFVEDWEKDP RCFPLGNFDG AMLTMGSSPR FPMYDNDFGW
401: GRPLAVRSGR ANKFDGKISA FPGRGGGGSV DLEVILSPET MDALESDPEF MQYVTVY

Best Arabidopsis Sequence Match ( AT2G39980.1 )
(BLAST)

001: MPSLEKSVTI ISRNRVFPDQ KSTLVDLKLS VSDLPMLSCH YIQKGCLFTC PNLPLPALIS HLKHSLSITL THFPPLAGRL STSSSGHVFL TCNDAGADFV
101: FAQAKSIHVS DVIAGIDVPD VVKEFFTYDR AVSYEGHNRP ILAVQVTELN DGVFIGCSVN HAVTDGTSLW NFINTFAEVS RGAKNVTRQP DFTRESVLIS
201: PAVLKVPQGG PKVTFDENAP LRERIFSFSR ESIQELKAVV NKKKWLTVDN GEIDGVELLG KQSNDKLNGK ENGILTEMLE SLFGRNDAVS KPVAVEISSF
301: QSLCALLWRA ITRARKLPSS KTTTFRMAVN CRHRLSPKLN PEYFGNAIQS VPTFATAAEV LSRDLKWCAD QLNQSVAAHQ DGRIRSVVAD WEANPRCFPL
401: GNADGASVTM GSSPRFPMYD NDFGWGRPVA VRSGRSNKFD GKISAFPGRE GNGTVDLEVV LSPETMAGIE SDGEFMRYVT NK

Arabidopsis Description

At2g39980/T28M21.14 [Source:UniProtKB/TrEMBL;Acc:O04201]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.