Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 6
- golgi 5
- extracellular 5
- vacuole 4
- plasma membrane 6
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75536 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 90.84 | 89.98 |
| Bra011646.1-P | Field mustard | endoplasmic reticulum, plasma membrane, vacuole | 90.46 | 89.43 |
| CDX69179 | Canola | plasma membrane | 90.46 | 89.27 |
| VIT_00s0434g00080.t01 | Wine grape | plasma membrane, vacuole | 65.27 | 66.02 |
| KRH07987 | Soybean | endoplasmic reticulum, plasma membrane, vacuole | 63.17 | 63.78 |
| KRH69730 | Soybean | extracellular, plasma membrane, vacuole | 63.74 | 63.74 |
| PGSC0003DMT400009410 | Potato | plasma membrane, vacuole | 59.35 | 60.51 |
| Solyc02g083450.2.1 | Tomato | vacuole | 59.35 | 59.69 |
| AT2G17760.1 | Thale cress | golgi, plasma membrane, vacuole | 48.28 | 49.32 |
| AT3G51330.1 | Thale cress | extracellular, plasma membrane, vacuole | 40.08 | 39.7 |
| AT3G51360.9 | Thale cress | vacuole | 37.4 | 39.36 |
| AT3G51340.1 | Thale cress | plasma membrane | 37.98 | 37.55 |
| AT3G51350.1 | Thale cress | extracellular, plasma membrane, vacuole | 37.79 | 37.5 |
| AT5G10080.1 | Thale cress | vacuole | 32.25 | 32.01 |
| AT4G33490.2 | Thale cress | endoplasmic reticulum, golgi, vacuole | 19.08 | 23.53 |
| AT1G44130.1 | Thale cress | vacuole | 17.94 | 23.21 |
| AT5G36260.1 | Thale cress | extracellular, plasma membrane, vacuole | 20.8 | 22.61 |
| AT3G02740.1 | Thale cress | vacuole | 20.99 | 22.54 |
| AT5G22850.1 | Thale cress | plasma membrane | 20.8 | 22.11 |
| AT1G65240.1 | Thale cress | golgi, plasma membrane, vacuole | 20.04 | 22.11 |
| AT1G05840.1 | Thale cress | plasma membrane | 20.23 | 21.86 |
| AT2G36670.1 | Thale cress | plasma membrane | 20.61 | 21.09 |
| AT1G08210.3 | Thale cress | extracellular | 21.37 | 20.74 |
| AT1G77480.1 | Thale cress | golgi, plastid, vacuole | 17.37 | 19.53 |
| AT3G42550.1 | Thale cress | vacuole | 15.65 | 19.07 |
| AT1G49050.1 | Thale cress | cytosol, plastid, vacuole | 18.89 | 16.98 |
| AT3G50050.1 | Thale cress | plasma membrane, vacuole | 18.13 | 15.03 |
| AT5G43100.1 | Thale cress | plasma membrane | 17.37 | 14.42 |
Protein Annotations
| MapMan:19.4.3.1 | Gene3D:2.40.70.10 | EntrezGene:829742 | MEROPS:A01.A53 | UniProt:A0A178V7W8 | ProteinID:AEE86584.1 |
| EMBL:AK316834 | ArrayExpress:AT4G35880 | EnsemblPlantsGene:AT4G35880 | RefSeq:AT4G35880 | TAIR:AT4G35880 | RefSeq:AT4G35880-TAIR-G |
| EnsemblPlants:AT4G35880.1 | TAIR:AT4G35880.1 | InterPro:Aspartic_peptidase_A1 | InterPro:Aspartic_peptidase_AS | UniProt:B3LF45 | EMBL:BT033033 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004190 | GO:GO:0005575 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0009056 | GO:GO:0016020 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0030163 | GO:GO:0031225 | InterPro:IPR021109 | InterPro:IPR033121 | RefSeq:NP_195313.2 |
| ProteinID:OAP01072.1 | InterPro:PEPTIDASE_A1 | PFAM:PF14541 | PFAM:PF14543 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00792 | ScanProsite:PS00141 |
| PFscan:PS51257 | PFscan:PS51767 | PANTHER:PTHR13683 | PANTHER:PTHR13683:SF384 | InterPro:Peptidase_aspartic_dom_sf | SUPFAM:SSF50630 |
| SignalP:SignalP-noTM | InterPro:TAXi_C | InterPro:TAXi_N | TMHMM:TMhelix | UniParc:UPI000034F181 | SEG:seg |
Description
AT4G35880 protein [Source:UniProtKB/TrEMBL;Acc:B3LF45]
Coordinates
chr4:+:16993062..16995821
Molecular Weight (calculated)
58049.7 Da
IEP (calculated)
5.456
GRAVY (calculated)
-0.132
Length
524 amino acids
Sequence
(BLAST)
(BLAST)
001: MSCCFFKTTL FLIPILMLLS FGSCNGRIFT FEMHHRFSDE VKQWSDSTGR FAKFPPKGSF EYFNALVLRD WLIRGRRLSE SESESESSLT FSDGNSTSRI
101: SSLGFLHYTT VKLGTPGMRF MVALDTGSDL FWVPCDCGKC APTEGATYAS EFELSIYNPK VSTTNKKVTC NNSLCAQRNQ CLGTFSTCPY MVSYVSAQTS
201: TSGILMEDVM HLTTEDKNPE RVEAYVTFGC GQVQSGSFLD IAAPNGLFGL GMEKISVPSV LAREGLVADS FSMCFGHDGV GRISFGDKGS SDQEETPFNL
301: NPSHPNYNIT VTRVRVGTTL IDDEFTALFD TGTSFTYLVD PMYTTVSESF HSQAQDKRHS PDSRIPFEYC YDMSNDANAS LIPSLSLTMK GNSHFTINDP
401: IIVISTEGEL VYCLAIVKSS ELNIIGQNYM TGYRVVFDRE KLVLAWKKFD CYDIEETNTT VAGTNKTAAV APAMAAGIKT HNNSSELHKT NQTISKSNSS
501: PNQISKTVDV WSFFRFVFIL LPLV
101: SSLGFLHYTT VKLGTPGMRF MVALDTGSDL FWVPCDCGKC APTEGATYAS EFELSIYNPK VSTTNKKVTC NNSLCAQRNQ CLGTFSTCPY MVSYVSAQTS
201: TSGILMEDVM HLTTEDKNPE RVEAYVTFGC GQVQSGSFLD IAAPNGLFGL GMEKISVPSV LAREGLVADS FSMCFGHDGV GRISFGDKGS SDQEETPFNL
301: NPSHPNYNIT VTRVRVGTTL IDDEFTALFD TGTSFTYLVD PMYTTVSESF HSQAQDKRHS PDSRIPFEYC YDMSNDANAS LIPSLSLTMK GNSHFTINDP
401: IIVISTEGEL VYCLAIVKSS ELNIIGQNYM TGYRVVFDRE KLVLAWKKFD CYDIEETNTT VAGTNKTAAV APAMAAGIKT HNNSSELHKT NQTISKSNSS
501: PNQISKTVDV WSFFRFVFIL LPLV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.