CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80970	Canola	plastid	14.37	12.29
CDY11333	Canola	plastid	14.37	12.29
CDX98861	Canola	plastid	14.17	12.1
CDX70133	Canola	plastid	13.98	11.89
CDX83311	Canola	plastid	14.57	11.76
CDX95746	Canola	plastid	14.37	11.68
CDY47655	Canola	cytosol	1.77	10.0
CDX77216	Canola	cytosol	13.98	8.0
TraesCS2D01G468300.1	Wheat	plastid	5.51	7.67
CDY31739	Canola	cytosol	13.39	7.56
CDY47888	Canola	cytosol	13.39	7.51
CDY65211	Canola	plastid	13.78	7.45

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.8.60	MapMan:13.2.1.4	Gene3D:3.40.50.300	GO:A0A078D2F7	InterPro:AAA+_ATPase
EnsemblPlants:CDX83310	ProteinID:CDX83310	ProteinID:CDX83310.1	InterPro:Cdc6/18	InterPro:Cdc6_C	GO:GO:0006139
GO:GO:0006259	GO:GO:0006270	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0051301	EnsemblPlantsGene:GSBRNA2T00138868001	InterPro:IPR036388	InterPro:P-loop_NTPase	PFAM:PF09079	PFAM:PF13401
PIRSF:PIRSF001767	PANTHER:PTHR10763	PANTHER:PTHR10763:SF26	SMART:SM01074	SUPFAM:SSF46785	SUPFAM:SSF52540
UniParc:UPI0004EDFE89	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

BnaA03g21960D

Coordinates

chrLK031832:+:974030..977523

Molecular Weight (calculated)

56356.4 Da

IEP (calculated)

9.113

GRAVY (calculated)

-0.269

Length

508 amino acids

Sequence
(BLAST)

001: MPTIAGPSSS PHKHIVAARS ENTGVSEVNT PRKRKLRSDS AAEVASTAIV TESSFATPMK WKSPRRCAVS SPKALKKEDS KGKLESPVMS AVKDRFDCLD
101: VKSKWNPRDD DQMRAVKEAL HVSKAPSTVV CREDEQRRVL EFVKGCMEQK KAGSLYICGC PGTGKSLSME KIRQQADDWA QQEGLPCLET VSVNCTSLTK
201: TTDIFSKILG ESETGKKVNG SSSPLQQLQV LFSQKQQSSS TKMMLIIADE MDYLITRDRG VLHELFMLTT LPFSRCILIG VANAIDLADR FLPKLKSLNC
301: KPLVVTFRAY SMEQILRILQ ERLVELPYVA FQSKALELCA RKVSAASGDM RKALSVCRSA LEILETEVKG STDQEPQSPV TEDQVVKMDH MVAALSKTFK
401: SPVVDTIQSL PQHQQIIVCS AAKAFRGSKK DRSIAELNKL YTEICKSSMI TPAGITEFTN MCTVLNDQGI LKLSNARDDK LKRVSLRVDE ADITFALKEI
501: RFFRNCLL

Best Arabidopsis Sequence Match ( AT2G29680.2 )
(BLAST)

001: MPAIAGPSSS PQKHVVGSRS ESIGGVRSAE VNTSRKRKLI SDSAAEVSAT VVLPVNSIST PMKWKSPRRC AVSIPKTSDE EIKEDSNEKL ENPVISVCLE
101: VKSKWNPKDD EQMKAVKEAL HVSKAPSTVV CREDEQRRVF EFVKGCMEQK KAGSLYICGC PGTGKSLSME KVRLQAEEWA KQAGLHCPET VSVNCTSLTK
201: STDIFSKILG NYESGKKANG SFSPLQQLQR LFSQKQQQSR SKMMLIIADE MDYLITRDRG VLHELFMLTT LPLSRCILIG VANAIDLADR FLPKLKSLNC
301: KPLVVTFRAY SKDQILRILQ ERLVALPFVA FQSNALEICA RKVSAASGDM RKALCVCRSA LEILEIEVRG SIDQEPKGPV PECQVVKMDH MIAALSKTFK
401: SPIVDTIQSL PQHQQIIVCS AAKAFRGSKK DRTIAELNKL YLEICKSSMI TPAGITEFSN MCTVLNDQGI LKLSLARDDK LKRVSLRVDE ADITFALKEI
501: RFFRNCLL

Arabidopsis Description

CDC6Cell division control protein 6 homolog [Source:UniProtKB/Swiss-Prot;Acc:O82387]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.