CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 2
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY31739	Canola	cytosol	90.88	89.77
CDY47888	Canola	cytosol	78.72	77.15
CDY65211	Canola	plastid	80.74	76.36
AT2G28880.1	Thale cress	plastid	77.7	75.08
PGSC0003DMT400025330	Potato	cytosol	20.5	72.22
Os06t0699700-01	Rice	cytosol	23.54	62.95
VIT_13s0019g04170.t01	Wine grape	cytosol	54.95	58.23
VIT_13s0019g04180.t01	Wine grape	cytosol	53.72	53.24
Solyc04g049360.2.1	Tomato	plastid	53.83	52.99
KRH34882	Soybean	plastid	54.95	52.64
KRG91886	Soybean	mitochondrion	53.94	51.73
KXG20764	Sorghum	mitochondrion	51.13	51.65
GSMUA_Achr3P05610_001	Banana	mitochondrion	49.55	51.22
TraesCS7B01G322500.4	Wheat	plastid	50.23	49.78
TraesCS7D01G414300.2	Wheat	plastid	50.0	49.55
TraesCS7A01G422100.3	Wheat	plastid	49.66	49.05
HORVU7Hr1G097570.14	Barley	plastid	50.11	48.85
Zm00001d036484_P001	Maize	mitochondrion	50.79	46.93
CDY11333	Canola	plastid	16.44	24.58
CDX80970	Canola	plastid	16.44	24.58
CDX98861	Canola	plastid	16.22	24.2
CDX70133	Canola	plastid	16.1	23.95
CDX95746	Canola	plastid	16.22	23.04
CDX83311	Canola	plastid	16.1	22.73
CDY47655	Canola	cytosol	2.25	22.22
CDX83310	Canola	nucleus, plastid	8.0	13.98

Protein Annotations

KEGG:00400+4.1.3.27	KEGG:00405+4.1.3.27	KEGG:00790+2.6.1.85	Gene3D:3.40.50.880	Gene3D:3.60.120.10	MapMan:7.5.1.1
GO:A0A078CJ50	InterPro:ADC_synthase	InterPro:Anth_synth_I-like	InterPro:Anth_synth_I_N	EnsemblPlants:CDX77216	ProteinID:CDX77216
ProteinID:CDX77216.1	InterPro:Chorismate_C	InterPro:Class_I_gatase-like	InterPro:GATASE	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009396	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00127881001	InterPro:IPR005801	InterPro:IPR017926
InterPro:IPR029062	PFAM:PF00117	PFAM:PF00425	PFAM:PF04715	PRINTS:PR00095	PRINTS:PR00099
PFscan:PS51273	PANTHER:PTHR11236	PANTHER:PTHR11236:SF18	MetaCyc:PWY-5958	MetaCyc:PWY-6543	MetaCyc:PWY-6660
MetaCyc:PWY-6661	InterPro:Para-NH2Bz_synth_comp_1	SUPFAM:SSF52317	SUPFAM:SSF56322	TIGRFAMs:TIGR00553	UniPathway:UPA00035
UniPathway:UPA00077	UniParc:UPI0004EE6283	SEG:seg	:	:	:

Description

BnaC04g40110D

Coordinates

chrLK031809:-:2204828..2209031

Molecular Weight (calculated)

98998.9 Da

IEP (calculated)

6.631

GRAVY (calculated)

-0.300

Length

888 amino acids

Sequence
(BLAST)

001: MKLLCPSDNV LRFSFASRLF SRELVSIDEN SKKKYISLPF CCGGMRKVFA SRHYVPGVHL QDSSVAEKSL PRRETGEAWL GFVRTLLIDN YDSYTFNIYQ
101: ALTTINGVPP VVIRNDEWTW EEAYRYLYED AAFDNIVISP GPGSPMCSSD IGICLRLLLE CRDIPILGVC LGHQALGYVH GAHVVHAPEP VHGRLSGIEH
201: DGNILFSDIP SGRNSDFKAD KESLPKELVP IAWTIYDDNG SFSVPVNNQS YWPSSHVDGK QDRHILMGIM HSTFPHYGLQ FHPESIATTY GSQIFKNFKD
301: ITLDYWNGCK APSLRRRKIN ETGNMQVPGA CGFLKELSRN RITGNGSSYY GNPRTSLSTA KKNGVDVLEP NAKLLRLKWK KLERLAHKVG GARNIFMELF
401: GKSRGHDTFW LDTSSGDKAR GRFSFMGGKG GSLWKQLIFS LSDQSEITSK HAGHLLIEDA NCSTEKRFLK EGFLDFLRKE LSSISYDEKD FEGLPFEFYG
501: GYVGCIGYDI KVECGMPNNR HKSKAPDACF FFVDNIVAID HHLDDVYVLS LHQDGTVETS FLKDTEEKII SMNVSSTRKW KDQTLPPIDS STSFVPDKSR
601: EQYINDVERC MQYIKDGESY ELCLTTQNRL KIGNTDPLGL YLHLRERNPA PYAAFLNFSN ANVSLCCSSP ERFLKLDGHG VLEAKPIKGT MARGSTPEED
701: ELLKLQLKLS EKNEAENLMI VDLLRNDLGR VCEPGSVHVP NLMDVETYTT VHTMVSTVRG LKRSDISPVE CVKAAFPGGS MTGAPKLRSV EILDSLEKCS
801: RGLYSGSIGY FSYNGTFDLN IVIRTVVIHE GEASIGAGGA IVALSNAEDE LEEMVLKTRA PANAVIEFCN GGSLIREDTS SSCVLMGR

Best Arabidopsis Sequence Match ( AT2G28880.1 )
(BLAST)

001: MNMNFSFCST SSELSYPSEN VLRFSVASRL FSPKWKKSFI SLPCRSKTTR KVLASSRYVP GKLEDLSVVK KSLPRREPVE KLGFVRTLLI DNYDSYTFNI
101: YQALSTINGV PPVVIRNDEW TWEEAYHYLY EDVAFDNIVI SPGPGSPMCP ADIGICLRLL LECRDIPILG VCLGHQALGY VHGAHVVHAP EPVHGRLSGI
201: EHDGNILFSD IPSGRNSDFK VVRYHSLIID KESLPKELVP IAWTIYDDTG SFSEKNSCVP VNNTGSPLGN GSVIPVSEKL ENRSHWPSSH VNGKQDRHIL
301: MGIMHSSFPH YGLQFHPESI ATTYGSQLFK NFKDITVNYW SRCKSTSLRR RNINDTANMQ VPDATQLLKE LSRTRCTGNG SSYFGNPKSL FSAKTNGVDV
401: FDMVDSSYPK PHTKLLRLKW KKHERLAHKV GGVRNIFMEL FGKNRGNDTF WLDTSSSDKA RGRFSFMGGK GGSLWKQLTF SLSDQSEVTS KHAGHLLIED
501: SQSSTEKQFL EEGFLDFLRK ELSSISYDEK DFEELPFDFC GGYVGCIGYD IKVECGMPIN RHKSNAPDAC FFFADNVVAI DHQLDDVYIL SLYEEGTAET
601: SFLNDTEEKL ISLMGLSTRK LEDQTLPVID SSQSKTSFVP DKSREQYIND VQSCMKYIKD GESYELCLTT QNRRKIGNAD PLGLYLHLRE RNPAPYAAFL
701: NFSNANLSLC SSSPERFLKL DRNGMLEAKP IKGTIARGST PEEDEFLKLQ LKLSEKNQAE NLMIVDLLRN DLGRVCEPGS VHVPNLMDVE SYTTVHTMVS
801: TIRGLKKTDI SPVECVRAAF PGGSMTGAPK LRSVEILDSL ENCSRGLYSG SIGYFSYNGT FDLNIVIRTV IIHEDEASIG AGGAIVALSS PEDEFEEMIL
901: KTRAPANAVM EFCSDQRRQ

Arabidopsis Description

ADCSAminodeoxychorismate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.