Factsheet for VIT_13s0019g04180.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400025330	Potato	cytosol	20.42	72.62
VIT_13s0019g04170.t01	Wine grape	cytosol	62.61	66.95
Os06t0699700-01	Rice	cytosol	22.21	59.94
GSMUA_Achr3P05610_001	Banana	mitochondrion	54.58	56.93
Solyc04g049360.2.1	Tomato	plastid	56.47	56.1
KRH34882	Soybean	plastid	57.7	55.77
KRG91886	Soybean	mitochondrion	57.14	55.29
CDX77216	Canola	cytosol	53.24	53.72
AT2G28880.1	Thale cress	plastid	55.02	53.65
CDY31739	Canola	cytosol	53.46	53.28
CDY47888	Canola	cytosol	53.57	52.98
Bra035662.1-P	Field mustard	cytosol	52.79	52.61
CDY65211	Canola	plastid	53.91	51.44
Bra011921.1-P	Field mustard	cytosol, plastid	53.46	51.12
KXG20764	Sorghum	mitochondrion	50.0	50.97
TraesCS7B01G322500.4	Wheat	plastid	50.56	50.56
TraesCS7D01G414300.2	Wheat	plastid	50.56	50.56
HORVU7Hr1G097570.14	Barley	plastid	51.34	50.49
TraesCS7A01G422100.3	Wheat	plastid	50.45	50.28
Zm00001d036484_P001	Maize	mitochondrion	50.56	47.14
VIT_06s0004g06320.t01	Wine grape	plastid	15.51	22.86
VIT_13s0067g00400.t01	Wine grape	plastid	14.17	22.01

Protein Annotations

KEGG:00400+4.1.3.27	KEGG:00405+4.1.3.27	KEGG:00790+2.6.1.85	EntrezGene:100263331	wikigene:100263331	Gene3D:3.60.120.10
MapMan:7.5.1.1	InterPro:ADC_synthase	EMBL:AM431583	InterPro:Anth_synth_I_N	ProteinID:CAN73645	ProteinID:CAN73645.1
ProteinID:CCB56192	ProteinID:CCB56192.1	InterPro:Chorismate_C	InterPro:Class_I_gatase-like	UniProt:F6HNH3	EMBL:FN595998
InterPro:GATASE	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006541	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009396
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0046654	GO:GO:0046820
InterPro:IPR005801	InterPro:IPR017926	InterPro:IPR029062	EntrezGene:LOC100263331	wikigene:LOC100263331	PFAM:PF00117
PFAM:PF00425	PFAM:PF04715	PRINTS:PR00096	PRINTS:PR00097	PRINTS:PR00099	PFscan:PS51273
PANTHER:PTHR11236	PANTHER:PTHR11236:SF18	InterPro:Para-NH2Bz_synth_comp_1	SUPFAM:SSF52317	SUPFAM:SSF56322	TIGRFAMs:TIGR00553
UniParc:UPI000210A172	ArrayExpress:VIT_13s0019g04180	EnsemblPlantsGene:VIT_13s0019g04180	EnsemblPlants:VIT_13s0019g04180.t01	RefSeq:XP_002274359	RefSeq:XP_002274359.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:+:5509009..5517208

Molecular Weight (calculated)

99742.4 Da

IEP (calculated)

6.364

GRAVY (calculated)

-0.352

Length

896 amino acids

Sequence
(BLAST)

001: MESTRTILSS ELKFPCFKGL HCRDLNEVAT KSFLRVKKDN VQVSKHQAGK SFVSSLLVPA QSEGLSKGKK QLEVANGNEI VRTLLIDNYD SYTYNVYQEL
101: SIVNGVPPVV VYNDDLTWEE VYHYLYEEKA FDNVVISPGP GTPSRPEDIG ICLRLLRECK DIPILGVCLG YEALGHVHGA EIVHAPEPIH GRLSELEHNG
201: CSLFDDIPSG PNSGFKVVRY HSLVIDAKTL SQELVPIAWT SSSDALSYLE IQKSGESPDA YESQMGQKRG NSSPSSHSEK IQNGKILMGI MHCTRPHYGV
301: QFHPESIGTA YGRKIFKNFR EITQDYWLRK ILFSNERREP RSIRLFKDLL GHRRLVHNAG ERRSSSFPSL LNLSLPSSDV KFLNLEWRKF NGLAGQVGGS
401: RNIFCELFGG NNAEYTFWLD SASTERGRFS FMGAKGGSLW KQFTFRLSHK SDTASEGGGH LSIEDSQGSI TNTFLEGGFL EFLNKELLSI RYDKRDYEGL
501: PFAFHGGYVG YLGYDLKVEC GAAFNRHKSK TPDACFFFAD NIVVIDHHYD DVYILSLHEG STATPAWLDE TEKRLLGLKA SDTNKSEVSM SLTATLSPSE
601: AGFLADKSME QYMKDVKQCL QFIKDGESYE LCLTSQLRKR IGEMDLLDFY LHLREKNPAP FAAWLNFPKE KLCICSSSPE RFLKLDENGM LEAKPIKGTV
701: PRGSAKEADE QLKQKLQCSE KDQAENLMIV DLLRNNLGRV CEVGSVHVPL LMDVESYTTV HTMVSTIRGK KDSTMSPVDC VRAAFPGGSM TGAPKLRSME
801: LLDSIESSSR GIYSGSIGFF SYNQTFDLNI VIRTVVIHEG EASVGAGGAI IALSDPAGEH EEMILKTRAP VNAVASYQKG AASNEKNSDS ELQSEE

Best Arabidopsis Sequence Match ( AT2G28880.1 )
(BLAST)

001: MNMNFSFCST SSELSYPSEN VLRFSVASRL FSPKWKKSFI SLPCRSKTTR KVLASSRYVP GKLEDLSVVK KSLPRREPVE KLGFVRTLLI DNYDSYTFNI
101: YQALSTINGV PPVVIRNDEW TWEEAYHYLY EDVAFDNIVI SPGPGSPMCP ADIGICLRLL LECRDIPILG VCLGHQALGY VHGAHVVHAP EPVHGRLSGI
201: EHDGNILFSD IPSGRNSDFK VVRYHSLIID KESLPKELVP IAWTIYDDTG SFSEKNSCVP VNNTGSPLGN GSVIPVSEKL ENRSHWPSSH VNGKQDRHIL
301: MGIMHSSFPH YGLQFHPESI ATTYGSQLFK NFKDITVNYW SRCKSTSLRR RNINDTANMQ VPDATQLLKE LSRTRCTGNG SSYFGNPKSL FSAKTNGVDV
401: FDMVDSSYPK PHTKLLRLKW KKHERLAHKV GGVRNIFMEL FGKNRGNDTF WLDTSSSDKA RGRFSFMGGK GGSLWKQLTF SLSDQSEVTS KHAGHLLIED
501: SQSSTEKQFL EEGFLDFLRK ELSSISYDEK DFEELPFDFC GGYVGCIGYD IKVECGMPIN RHKSNAPDAC FFFADNVVAI DHQLDDVYIL SLYEEGTAET
601: SFLNDTEEKL ISLMGLSTRK LEDQTLPVID SSQSKTSFVP DKSREQYIND VQSCMKYIKD GESYELCLTT QNRRKIGNAD PLGLYLHLRE RNPAPYAAFL
701: NFSNANLSLC SSSPERFLKL DRNGMLEAKP IKGTIARGST PEEDEFLKLQ LKLSEKNQAE NLMIVDLLRN DLGRVCEPGS VHVPNLMDVE SYTTVHTMVS
801: TIRGLKKTDI SPVECVRAAF PGGSMTGAPK LRSVEILDSL ENCSRGLYSG SIGYFSYNGT FDLNIVIRTV IIHEDEASIG AGGAIVALSS PEDEFEEMIL
901: KTRAPANAVM EFCSDQRRQ

Arabidopsis Description

ADCSAminodeoxychorismate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.