Factsheet for VIT_13s0067g00400.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70133	Canola	plastid	67.59	65.33
KRG97759	Soybean	plastid	66.55	65.2
VIT_06s0004g06320.t01	Wine grape	plastid	68.28	64.8
KRG97758	Soybean	plastid	61.87	64.79
CDX98861	Canola	plastid	66.55	64.54
Bra009130.1-P	Field mustard	plastid	66.72	64.49
CDY11333	Canola	plastid	66.38	64.48
Bra005864.1-P	Field mustard	plastid	66.2	64.31
CDX80970	Canola	plastid	66.03	64.14
AT3G55870.3	Thale cress	plastid	65.34	63.79
GSMUA_Achr9P07690_001	Banana	mitochondrion	65.16	63.09
AT5G05730.2	Thale cress	plastid	67.24	62.18
Os03t0826500-01	Rice	plastid	62.05	62.05
Zm00001d028536_P001	Maize	plastid	64.3	61.42
KXG37227	Sorghum	mitochondrion, plastid	61.35	61.35
KXG39728	Sorghum	plastid	64.12	61.26
PGSC0003DMT400084873	Potato	cytosol	8.49	61.25
Os03t0264400-01	Rice	plastid	64.12	61.06
Zm00001d012925_P001	Maize	plastid	60.83	60.73
PGSC0003DMT400051367	Potato	cytosol, mitochondrion	56.15	60.56
TraesCS4A01G089800.1	Wheat	plastid	62.74	60.03
TraesCS4B01G214500.2	Wheat	plastid	62.39	60.0
TraesCS4D01G215100.1	Wheat	plastid	62.56	59.77
HORVU4Hr1G061120.2	Barley	plastid	61.87	58.62
Zm00001d034713_P002	Maize	plastid	61.7	58.55
TraesCS5D01G503800.1	Wheat	plastid	62.05	58.4
TraesCS5B01G502700.1	Wheat	plastid	61.01	57.52
Solyc06g005980.2.1	Tomato	plastid	56.5	56.01
HORVU5Hr1G115160.1	Barley	cytosol, mitochondrion, plastid	51.47	48.37
PGSC0003DMT400069076	Potato	cytosol	9.19	43.44
VIT_13s0019g04170.t01	Wine grape	cytosol	21.49	14.8
VIT_13s0019g04180.t01	Wine grape	cytosol	22.01	14.17

Protein Annotations

KEGG:00400+4.1.3.27	KEGG:00405+4.1.3.27	EntrezGene:100262156	wikigene:100262156	Gene3D:3.60.120.10	MapMan:4.1.5.3.1.1
InterPro:ADC_synthase	InterPro:Anth_synth_I-like	InterPro:Anth_synth_I_N	ProteinID:CCB49881	ProteinID:CCB49881.1	InterPro:Chorismate_C
UniProt:F6HCE6	EMBL:FN595514	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004049
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005801	EntrezGene:LOC100262156	wikigene:LOC100262156
PFAM:PF00425	PFAM:PF04715	PRINTS:PR00095	PANTHER:PTHR11236	PANTHER:PTHR11236:SF33	SUPFAM:SSF56322
UniParc:UPI000210876E	ArrayExpress:VIT_13s0067g00400	EnsemblPlantsGene:VIT_13s0067g00400	EnsemblPlants:VIT_13s0067g00400.t01	unigene:Vvi.20427	RefSeq:XP_002271164
RefSeq:XP_002271164.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:247988..257075

Molecular Weight (calculated)

64188.8 Da

IEP (calculated)

5.966

GRAVY (calculated)

-0.155

Length

577 amino acids

Sequence
(BLAST)

001: METLAVSYRS MPFSDRISHV LLAGVSTRSS VSVPCQRAFK CLSLAAPSLG IDDNPVKFKE ASRNGNIVPL HACIFSDQLT PILAYRCLVK EGDLEAPSFV
101: FESVVPGSQD SSVGRYSVVG AQPCMEIVAK ENKVITMDHE EGLRTEELVE DPMVIPRRIA EGWKPQLLDE LPDTFCGGWV GFFSYDTVCY VEKKKLPFSK
201: AQDDDRNLAD IHLALYDDVI VFDHVEKKVH VIHWVRLDLH SSVEKAYVDG MKRLEILLSR VQDIDPPKLS PGCVESHIQS FSSSLNESNM TSEAYKKAKE
301: HIRAGDIFQI GLSQCFERRT FADPFEVYRA FRVVNPSPFM AYLQARGCVL VASSPEILTH VKKNNIVNRP LAGTVRRGTT IHEDEMLEGQ LLNDEKQCAE
401: HIMLVDLGRN NVGKVAKFGS LKVEDLKAVE CFSHVMHISS TVTGELQDHL TSWNALRSIL HVGAVSGAPK VKAMELIDEW EESRRGPYGG GFGNVSFTGD
501: MEIDLTLRTI VFPTGNRYDT LFSYKDTKLR REWVAYFQAG AGIVADSVVD DKQRDCEGKA AALACAIDLA EAAFVKK

Best Arabidopsis Sequence Match ( AT5G05730.1 )
(BLAST)

001: MSSSMNVATM QALTFSRRLL PSVASRYLSS SSVTVTGYSG RSSAYAPSFR SIKCVSVSPE ASIVSDTKKL ADASKSTNLI PIYRCIFSDQ LTPVLAYRCL
101: VKEDDREAPS FLFESVEPGS QMSSVGRYSV VGAQPAMEIV AKENKVIVMD HNNETMTEEF VEDPMEIPRK ISEKWNPDPQ LVQDLPDAFC GGWVGFFSYD
201: TVRYVEKRKL PFSKAPEDDR NLPDMHLGLY DDVVVFDHVE KKAYVIHWIR LDGSLPYEKA YSNGMQHLEN LVAKLHDIEP PKLAAGNVNL QTRQFGPSLD
301: NSNVTCEEYK EAVVKAKEHI LAGDIFQIVL SQRFERRTFA DPFEVYRALR VVNPSPYMGY LQARGCILVA SSPEILTKVK QNKIVNRPLA GTSKRGKNEV
401: EDKRLEKELL ENEKQCAEHI MLVDLGRNDV GKVTKYGSVK VEKLMNIERY SHVMHISSTV TGELQDGLTC WDVLRAALPV GTVSGAPKVK AMELIDELEP
501: TRRGPYSGGF GGVSFTGDMD IALSLRTIVF PTACQYNTMY SYKDANKRRE WVAYLQAGAG VVADSDPQDE HCECQNKAAG LARAIDLAES AFVKK

Arabidopsis Description

ASA1Anthranilate synthase alpha subunit 1 [Source:UniProtKB/TrEMBL;Acc:F4K0T5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.