Factsheet for Solyc06g005980.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400051367	Potato	cytosol, mitochondrion	82.82	90.09
PGSC0003DMT400084873	Potato	cytosol	10.48	76.25
PGSC0003DMT400069076	Potato	cytosol	14.78	70.49
Solyc06g006100.2.1	Tomato	plastid	59.97	59.45
GSMUA_Achr9P07690_001	Banana	mitochondrion	60.48	59.06
KRG97759	Soybean	plastid	59.62	58.91
KRG97758	Soybean	plastid	54.64	57.71
KXG37227	Sorghum	mitochondrion, plastid	56.7	57.19
Os03t0826500-01	Rice	plastid	56.53	57.02
AT3G55870.3	Thale cress	plastid	57.56	56.68
VIT_13s0067g00400.t01	Wine grape	plastid	56.01	56.5
Zm00001d012925_P001	Maize	plastid	55.67	56.06
CDY11333	Canola	plastid	55.84	54.71
CDX80970	Canola	plastid	55.84	54.71
Zm00001d028536_P001	Maize	plastid	56.7	54.64
Zm00001d034713_P002	Maize	plastid	57.04	54.61
Os03t0264400-01	Rice	plastid	56.7	54.46
CDX70133	Canola	plastid	55.84	54.44
Bra009130.1-P	Field mustard	plastid	55.84	54.44
Bra005864.1-P	Field mustard	plastid	55.5	54.38
CDX98861	Canola	plastid	55.5	54.29
TraesCS4B01G214500.2	Wheat	plastid	55.5	53.83
KXG39728	Sorghum	plastid	55.84	53.81
TraesCS5D01G503800.1	Wheat	plastid	56.53	53.67
TraesCS4D01G215100.1	Wheat	plastid	55.67	53.64
TraesCS5B01G502700.1	Wheat	plastid	56.36	53.59
TraesCS4A01G089800.1	Wheat	plastid	55.33	53.4
HORVU4Hr1G061120.2	Barley	plastid	54.98	52.55
AT5G05730.2	Thale cress	plastid	56.19	52.4
HORVU5Hr1G115160.1	Barley	cytosol, mitochondrion, plastid	46.56	44.14
Solyc04g049360.2.1	Tomato	plastid	21.31	13.75

Protein Annotations

KEGG:00400+4.1.3.27	KEGG:00405+4.1.3.27	Gene3D:3.60.120.10	MapMan:4.1.5.3.1.1	InterPro:ADC_synthase	InterPro:Anth_synth_I-like
InterPro:Anth_synth_I_N	InterPro:Chorismate_C	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004049
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	InterPro:IPR005801
UniProt:K4C380	PFAM:PF00425	PFAM:PF04715	PRINTS:PR00095	PANTHER:PTHR11236	PANTHER:PTHR11236:SF33
SUPFAM:SSF56322	EnsemblPlantsGene:Solyc06g005980.2	EnsemblPlants:Solyc06g005980.2.1	UniParc:UPI0002765F28	SEG:seg	:

Description

No Description!

Coordinates

chr6:-:964946..972193

Molecular Weight (calculated)

65985.2 Da

IEP (calculated)

6.819

GRAVY (calculated)

-0.303

Length

582 amino acids

Sequence
(BLAST)

001: MQLLPICHRN ILPISRSSTY ARLHCCSSSL RHVIDEKRFI EVSKTGNLIP LYTTIFSDHL TPVLAYRCLV KEEDHEAPSF LYESVEGSSV GRYSVVGAQP
101: SMEIIVKEHN VTILDHHAGK LTEKTVEDPM TIPASISNGW KPGLIDDELP DTFCGGWFGY FSYDTVRYVE NNKFPFLRAP EDDRNLADIQ LGLYEDVIVF
201: DHVEKKAHVI HWVWLDQYSS LLEAYLDGKK HLEILMSRVQ GIKSPRLSPG SVDFCIHEFE TSLTQKNMTC VEYKNAILQA KEHIASGDIH QIVLSQRFER
301: RTFADPFEVY RALRIVNPSP YMTYIQARGC TLVASSPETL ARVKKRRIVN RPLARTTTRG RTPDEDLMLE MQMLKDIKPG FVNVEKLMSV KRYSDVMHMS
401: STVSGELLDH LTCWDALRAA LPVGTICGAP KVKAMELIDQ LEVSRRGPYS GGFGGISFSG DMDIGLALRM MVFMNGPRYD TMYSYTDASK RQEWVAHLQS
501: ESRIVADSDP DEKQKECEDK VASLCRAIDL AELTFVKGRP SVVKINGSVP NVFSRGRVHE KKETNYPNEM RMNSEYLSNS VS

Best Arabidopsis Sequence Match ( AT5G05730.1 )
(BLAST)

001: MSSSMNVATM QALTFSRRLL PSVASRYLSS SSVTVTGYSG RSSAYAPSFR SIKCVSVSPE ASIVSDTKKL ADASKSTNLI PIYRCIFSDQ LTPVLAYRCL
101: VKEDDREAPS FLFESVEPGS QMSSVGRYSV VGAQPAMEIV AKENKVIVMD HNNETMTEEF VEDPMEIPRK ISEKWNPDPQ LVQDLPDAFC GGWVGFFSYD
201: TVRYVEKRKL PFSKAPEDDR NLPDMHLGLY DDVVVFDHVE KKAYVIHWIR LDGSLPYEKA YSNGMQHLEN LVAKLHDIEP PKLAAGNVNL QTRQFGPSLD
301: NSNVTCEEYK EAVVKAKEHI LAGDIFQIVL SQRFERRTFA DPFEVYRALR VVNPSPYMGY LQARGCILVA SSPEILTKVK QNKIVNRPLA GTSKRGKNEV
401: EDKRLEKELL ENEKQCAEHI MLVDLGRNDV GKVTKYGSVK VEKLMNIERY SHVMHISSTV TGELQDGLTC WDVLRAALPV GTVSGAPKVK AMELIDELEP
501: TRRGPYSGGF GGVSFTGDMD IALSLRTIVF PTACQYNTMY SYKDANKRRE WVAYLQAGAG VVADSDPQDE HCECQNKAAG LARAIDLAES AFVKK

Arabidopsis Description

ASA1Anthranilate synthase alpha subunit 1 [Source:UniProtKB/TrEMBL;Acc:F4K0T5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.