Factsheet for Solyc06g006100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400010634	Potato	cytosol	98.47	98.47
KRG90616	Soybean	nucleus, plastid	76.49	79.19
VIT_06s0004g06320.t01	Wine grape	plastid	79.56	76.81
KRH36143	Soybean	plastid	48.38	75.33
KXG37227	Sorghum	mitochondrion, plastid	70.53	71.75
GSMUA_Achr9P07690_001	Banana	mitochondrion	71.89	70.81
Os03t0826500-01	Rice	plastid	69.51	70.71
Zm00001d012925_P001	Maize	plastid	67.97	69.03
TraesCS4B01G214500.2	Wheat	plastid	69.85	68.33
KXG39728	Sorghum	plastid	70.19	68.21
CDX83311	Canola	plastid	73.08	68.2
Zm00001d028536_P001	Maize	plastid	70.02	68.05
CDX95746	Canola	plastid	72.4	68.0
AT2G29690.1	Thale cress	plastid	71.89	67.95
TraesCS4A01G089800.1	Wheat	plastid	69.68	67.83
Zm00001d034713_P002	Maize	plastid	70.19	67.76
TraesCS4D01G215100.1	Wheat	plastid	69.68	67.72
Os03t0264400-01	Rice	plastid	68.99	66.83
HORVU4Hr1G061120.2	Barley	plastid	69.34	66.83
TraesCS5D01G503800.1	Wheat	plastid	69.17	66.23
TraesCS5B01G502700.1	Wheat	plastid	68.99	66.18
Solyc06g005980.2.1	Tomato	plastid	59.45	59.97
HORVU5Hr1G115160.1	Barley	cytosol, mitochondrion, plastid	57.75	55.21
Bra000473.1-P	Field mustard	plastid	72.4	37.58
Solyc04g049360.2.1	Tomato	plastid	26.24	17.07

Protein Annotations

KEGG:00400+4.1.3.27	KEGG:00405+4.1.3.27	Gene3D:3.60.120.10	MapMan:4.1.5.3.1.1	InterPro:ADC_synthase	InterPro:Anth_synth_I-like
InterPro:Anth_synth_I_N	InterPro:Anth_synth_I_PabB	InterPro:Chorismate_C	GO:GO:0000162	GO:GO:0003674	GO:GO:0003824
GO:GO:0004049	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005950
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
InterPro:IPR005801	UniProt:K4C392	PFAM:PF00425	PFAM:PF04715	PRINTS:PR00095	PANTHER:PTHR11236
PANTHER:PTHR11236:SF33	SUPFAM:SSF56322	EnsemblPlantsGene:Solyc06g006100.2	EnsemblPlants:Solyc06g006100.2.1	TIGRFAMs:TIGR00564	UniParc:UPI0002765F34
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:1130983..1138234

Molecular Weight (calculated)

65604.7 Da

IEP (calculated)

7.148

GRAVY (calculated)

-0.235

Length

587 amino acids

Sequence
(BLAST)

001: MKTLAVSHHR PVISGTGHRS SIFSGHRATS LSFSRSPVSA ARLRILKCSA AISPPSLVDD SVKFKEAAKH GNLIPLYRSI FSDHLTPVLA YRCLVKEDDR
101: EAPSFLFESV EPGLKASNVG RYSVIGAQPT MEIVAKENMV TIMDHLEGSR TEEFEEDPMS IPRRIMEKWK PQCINELPEA FCGGWVGFFS YDTVRYVEKK
201: KLPFSNAPMD DRNLPDLHLG LYDDVIVFDH VEKKAFVIHW VRLDRFASVE EAYNDGTTRL EALLSRVHDI VPPTLASGSI KLHTSLFGTS LKNSTMTSED
301: YQKAVLKAKE HILAGDIFQI VLSQRFERRT FADPFEVYRA LRIVNPSPYM TYLQARGCIL VASSPEILTR VKKKTVTNRP LAGTIRRGKT LEEDYMLENQ
401: LLHDEKQCAE HIMLVDLGRN DVGKVSKPGS VKVEKLMNIE RYSHVMHISS TVTGELLDHL SSWDALRAAL PVGTVSGAPK VKAMELIDQL EVTRRGPYSG
501: GFGGISFTGE MDIALALRTI VFPTGTRYDT MYSYKDVDKR RDWIAYLQAG AGIVADSDPA DEQNECENKA AALVRAIDLA ESSFVDK

Best Arabidopsis Sequence Match ( AT2G29690.1 )
(BLAST)

001: MSAVSISAVK SDFFTVEAIA VTHHRTPHPP HFPSLRFPLS LKSPPATSLN LVAGSKLLHF SRRLPSIKCS YTPSLDLSEE QFTKFKKASE KGNLVPLFRC
101: VFSDHLTPIL AYRCLVKEDD RDAPSFLFES VEPGSQSSNI GRYSVVGAQP TIEIVAKGNV VTVMDHGASL RTEEEVDDPM MVPQKIMEEW NPQGIDELPE
201: AFCGGWVGYF SYDTVRYVEK KKLPFSNAPE DDRSLPDVNL GLYDDVIVFD HVEKKAYVIH WVRIDKDRSV EENFREGMNR LESLTSRIQD QKPPKMPTGF
301: IKLRTQLFGP KLEKSTMTSE AYKEAVVEAK EHILAGDIFQ IVLSQRFERR TFADPFEIYR ALRIVNPSPY MAYLQVRGCI LVASSPEILL RSKNRKITNR
401: PLAGTVRRGK TPKEDLMLEK ELLSDEKQCA EHIMLVDLGR NDVGKVSKPG SVEVKKLKDI EWFSHVMHIS STVVGELLDH LTSWDALRAV LPVGTVSGAP
501: KVKAMELIDE LEVTRRGPYS GGFGGISFNG DMDIALALRT MVFPTNTRYD TLYSYKHPQR RREWIAHIQA GAGIVADSNP DDEHRECENK AAALARAIDL
601: AESSFLEAPE FTTITPHINN I

Arabidopsis Description

ASA2Anthranilate synthase alpha subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P32069]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.