Factsheet for PGSC0003DMT400010634

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 9
mitochondrion 1

Predictors

GFP

MS/MS

Papers

cytosol: 22313117

msms PMID: 22313117 doi

S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto

Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g006100.2.1	Tomato	plastid	98.47	98.47
KRG90616	Soybean	nucleus, plastid	76.83	79.54
VIT_06s0004g06320.t01	Wine grape	plastid	79.73	76.97
KRH36143	Soybean	plastid	48.89	76.13
KXG37227	Sorghum	mitochondrion, plastid	70.36	71.58
PGSC0003DMT400084873	Potato	cytosol	9.71	71.25
Os03t0826500-01	Rice	plastid	69.85	71.06
GSMUA_Achr9P07690_001	Banana	mitochondrion	72.06	70.97
Zm00001d012925_P001	Maize	plastid	68.48	69.55
CDX83311	Canola	plastid	73.25	68.36
TraesCS4B01G214500.2	Wheat	plastid	69.85	68.33
CDX95746	Canola	plastid	72.57	68.16
AT2G29690.1	Thale cress	plastid	72.06	68.12
Zm00001d028536_P001	Maize	plastid	70.02	68.05
KXG39728	Sorghum	plastid	70.02	68.05
Zm00001d034713_P002	Maize	plastid	70.36	67.93
TraesCS4D01G215100.1	Wheat	plastid	69.68	67.72
TraesCS4A01G089800.1	Wheat	plastid	69.51	67.66
Os03t0264400-01	Rice	plastid	68.99	66.83
HORVU4Hr1G061120.2	Barley	plastid	69.34	66.83
TraesCS5D01G503800.1	Wheat	plastid	69.34	66.39
TraesCS5B01G502700.1	Wheat	plastid	69.17	66.34
PGSC0003DMT400051367	Potato	cytosol, mitochondrion	60.14	65.98
HORVU5Hr1G115160.1	Barley	cytosol, mitochondrion, plastid	57.92	55.37
PGSC0003DMT400069076	Potato	cytosol	10.9	52.46
PGSC0003DMT400025330	Potato	cytosol	17.38	40.48
Bra000473.1-P	Field mustard	plastid	72.57	37.67

Protein Annotations

KEGG:00400+4.1.3.27	KEGG:00405+4.1.3.27	EntrezGene:102595737	Gene3D:3.60.120.10	MapMan:4.1.5.3.1.1	InterPro:ADC_synthase
InterPro:Anth_synth_I-like	InterPro:Anth_synth_I_N	InterPro:Anth_synth_I_PabB	InterPro:Chorismate_C	GO:GO:0000162	GO:GO:0003674
GO:GO:0003824	GO:GO:0004049	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
InterPro:IPR005801	UniProt:M0ZYC7	PFAM:PF00425	PFAM:PF04715	EnsemblPlantsGene:PGSC0003DMG400004153	PGSC:PGSC0003DMG400004153
EnsemblPlants:PGSC0003DMT400010634	PRINTS:PR00095	PANTHER:PTHR11236	PANTHER:PTHR11236:SF33	SUPFAM:SSF56322	TIGRFAMs:TIGR00564
UniParc:UPI000295DA18	RefSeq:XP_006344046.1	SEG:seg	:	:	:

Description

Anthranilate synthase alpha subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400004153]

Coordinates

chr6:-:3432119..3441016

Molecular Weight (calculated)

65510.5 Da

IEP (calculated)

6.870

GRAVY (calculated)

-0.231

Length

587 amino acids

Sequence
(BLAST)

001: MNTLAVSHHR PVISGSGHRS SIFSGHRATS LSFSSSPVAA ARLRILKCSA AVSPPSLVDD SVKFKEAAKD GNLIPLYRSI FSDHLTPVLA YRCLVKEDDR
101: EAPSFLFESV EPGLKASNVG RYSVIGAQPT MEIVAKENMV TIMDHLEGSR TEEFEEDPMS IPRRIMEKWK PQCINELPEA FCGGWVGFFS YDTVRYVEKK
201: KLPFSNAPMD DRNLPDLHLG LYDDVIVFDH VEKKAFVIHW VRLDRFASVE EAYNDGTTRL EALLSRVHDI VPPTLASGSI KLHTSLFGTS LKKSNMTSED
301: YQKAVLKAKE HILAGDIFQI VLSQRFERRT FADPFEVYRA LRIVNPSPYM TYLQARGCIL VASSPEILTR VKKRTVTNRP LAGTIRRGKT LEEDYMLENQ
401: LLHDEKQCAE HIMLVDLGRN DVGKVSKPGS VKVEKLMNIE RYSHVMHISS TVTGELLDHL SSWDALRAAL PVGTVSGAPK VKAMELIDQL EVTRRGPYSG
501: GFGGISFTGE MDIALALRTI VFPTGTRYDT MYSYKDVDKR RDWIAYLQAG AGIVADSDPA DEQNECENKA AALVRAIDLA ESSFVDK

Best Arabidopsis Sequence Match ( AT2G29690.1 )
(BLAST)

001: MSAVSISAVK SDFFTVEAIA VTHHRTPHPP HFPSLRFPLS LKSPPATSLN LVAGSKLLHF SRRLPSIKCS YTPSLDLSEE QFTKFKKASE KGNLVPLFRC
101: VFSDHLTPIL AYRCLVKEDD RDAPSFLFES VEPGSQSSNI GRYSVVGAQP TIEIVAKGNV VTVMDHGASL RTEEEVDDPM MVPQKIMEEW NPQGIDELPE
201: AFCGGWVGYF SYDTVRYVEK KKLPFSNAPE DDRSLPDVNL GLYDDVIVFD HVEKKAYVIH WVRIDKDRSV EENFREGMNR LESLTSRIQD QKPPKMPTGF
301: IKLRTQLFGP KLEKSTMTSE AYKEAVVEAK EHILAGDIFQ IVLSQRFERR TFADPFEIYR ALRIVNPSPY MAYLQVRGCI LVASSPEILL RSKNRKITNR
401: PLAGTVRRGK TPKEDLMLEK ELLSDEKQCA EHIMLVDLGR NDVGKVSKPG SVEVKKLKDI EWFSHVMHIS STVVGELLDH LTSWDALRAV LPVGTVSGAP
501: KVKAMELIDE LEVTRRGPYS GGFGGISFNG DMDIALALRT MVFPTNTRYD TLYSYKHPQR RREWIAHIQA GAGIVADSNP DDEHRECENK AAALARAIDL
601: AESSFLEAPE FTTITPHINN I

Arabidopsis Description

ASA2Anthranilate synthase alpha subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P32069]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.