CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH36143	Soybean	plastid	57.67	86.74
PGSC0003DMT400010634	Potato	cytosol	79.54	76.83
Solyc06g006100.2.1	Tomato	plastid	79.19	76.49
VIT_06s0004g06320.t01	Wine grape	plastid	80.6	75.16
KRG97759	Soybean	plastid	73.55	70.8
KRG97758	Soybean	plastid	68.08	70.05
GSMUA_Achr9P07690_001	Banana	mitochondrion	73.19	69.63
CDX83311	Canola	plastid	76.72	69.16
KXG37227	Sorghum	mitochondrion, plastid	70.02	68.8
CDX95746	Canola	plastid	75.84	68.8
AT2G29690.1	Thale cress	plastid	75.31	68.76
Os03t0826500-01	Rice	plastid	69.66	68.46
Zm00001d012925_P001	Maize	plastid	68.78	67.47
Zm00001d028536_P001	Maize	plastid	70.9	66.56
Zm00001d034713_P002	Maize	plastid	71.25	66.45
KXG39728	Sorghum	plastid	70.37	66.06
TraesCS4B01G214500.2	Wheat	plastid	69.49	65.67
Os03t0264400-01	Rice	plastid	70.02	65.51
TraesCS4D01G215100.1	Wheat	plastid	69.49	65.23
TraesCS4A01G089800.1	Wheat	plastid	69.31	65.17
HORVU4Hr1G061120.2	Barley	plastid	68.78	64.04
TraesCS5D01G503800.1	Wheat	plastid	69.14	63.95
TraesCS5B01G502700.1	Wheat	plastid	68.25	63.24
HORVU5Hr1G115160.1	Barley	cytosol, mitochondrion, plastid	55.91	51.63
Bra000473.1-P	Field mustard	plastid	75.13	37.67
KRH34882	Soybean	plastid	24.87	15.21
KRG91886	Soybean	mitochondrion	23.81	14.58

Protein Annotations

KEGG:00400+4.1.3.27	KEGG:00405+4.1.3.27	EntrezGene:100783691	Gene3D:3.60.120.10	MapMan:4.1.5.3.1.1	EMBL:ACUP02012627
InterPro:ADC_synthase	InterPro:Anth_synth_I-like	InterPro:Anth_synth_I_N	InterPro:Anth_synth_I_PabB	InterPro:Chorismate_C	EnsemblPlantsGene:GLYMA_20G103200
GO:GO:0000162	GO:GO:0003674	GO:GO:0003824	GO:GO:0004049	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	UniProt:I1NF54	InterPro:IPR005801	EnsemblPlants:KRG90616
ProteinID:KRG90616	ProteinID:KRG90616.1	PFAM:PF00425	PFAM:PF04715	PRINTS:PR00095	PANTHER:PTHR11236
PANTHER:PTHR11236:SF33	MetaCyc:PWY-5958	MetaCyc:PWY-6660	MetaCyc:PWY-6661	SUPFAM:SSF56322	TIGRFAMs:TIGR00564
UniParc:UPI00018CC721	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:+:34603939..34608554

Molecular Weight (calculated)

63711.6 Da

IEP (calculated)

7.809

GRAVY (calculated)

-0.288

Length

567 amino acids

Sequence
(BLAST)

001: MATVPHPLSL ASVGFANRTS SISRSTLKCC AQSPSPSLVD NAQKFLEASK KGNVIPLFRC IFSDHLTPVL AYRCLVKEDE RDAPSFLFES VEPGQISSIG
101: RYSVVGAQPC MEIVAKENVV TIMDHVEGRR SEEIVEDPLV IPRRIMEKWT PQLLDELPEA FCGGWVGYFS YDTMRYVEKK KLPFSNAPVD DRNLPDVHLG
201: LYDSVIVFDH VEKKAYVIHW VRVDRYSSAE EAFEDGRNRL ETLVSRVHDI ITPRLPTGSI KLYTRLFGPK LEMSNMTNEE YKRAVLKAKE HIRAGDIFQI
301: VLSQRFEQRT FADPFEIYRA LRIVNPSPYM TYLQARGSIL VASSPEILTR VKKRKITNRP LAGTVRRGKT PKEDIMLEKQ LLNDEKQCAE HVMLVDLGRN
401: DVGKVSKPGS VQVEKLMNIE RYSHVMHISS TVTGELLDHL TSWDALRAAL PVGTVSGAPK VKAMQLIDEL EVARRGPYSG GFGGISFNGD MDIALALRTI
501: VFPTNARYDT MYSYKDKNKR REWVAHLQAG AGIVADSDPA DEQRECENKA AALARAIDLA ESSFVDK

Best Arabidopsis Sequence Match ( AT2G29690.1 )
(BLAST)

001: MSAVSISAVK SDFFTVEAIA VTHHRTPHPP HFPSLRFPLS LKSPPATSLN LVAGSKLLHF SRRLPSIKCS YTPSLDLSEE QFTKFKKASE KGNLVPLFRC
101: VFSDHLTPIL AYRCLVKEDD RDAPSFLFES VEPGSQSSNI GRYSVVGAQP TIEIVAKGNV VTVMDHGASL RTEEEVDDPM MVPQKIMEEW NPQGIDELPE
201: AFCGGWVGYF SYDTVRYVEK KKLPFSNAPE DDRSLPDVNL GLYDDVIVFD HVEKKAYVIH WVRIDKDRSV EENFREGMNR LESLTSRIQD QKPPKMPTGF
301: IKLRTQLFGP KLEKSTMTSE AYKEAVVEAK EHILAGDIFQ IVLSQRFERR TFADPFEIYR ALRIVNPSPY MAYLQVRGCI LVASSPEILL RSKNRKITNR
401: PLAGTVRRGK TPKEDLMLEK ELLSDEKQCA EHIMLVDLGR NDVGKVSKPG SVEVKKLKDI EWFSHVMHIS STVVGELLDH LTSWDALRAV LPVGTVSGAP
501: KVKAMELIDE LEVTRRGPYS GGFGGISFNG DMDIALALRT MVFPTNTRYD TLYSYKHPQR RREWIAHIQA GAGIVADSNP DDEHRECENK AAALARAIDL
601: AESSFLEAPE FTTITPHINN I

Arabidopsis Description

ASA2Anthranilate synthase alpha subunit 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:P32069]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.