CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH34882	Soybean	plastid	89.96	89.86
PGSC0003DMT400025330	Potato	cytosol	20.52	75.4
VIT_13s0019g04170.t01	Wine grape	cytosol	57.13	63.13
Os06t0699700-01	Rice	cytosol	22.03	61.45
Solyc04g049360.2.1	Tomato	plastid	56.26	57.76
VIT_13s0019g04180.t01	Wine grape	cytosol	55.29	57.14
GSMUA_Achr3P05610_001	Banana	mitochondrion	50.76	54.71
AT2G28880.1	Thale cress	plastid	54.0	54.41
CDY31739	Canola	cytosol	52.59	54.17
CDX77216	Canola	cytosol	51.73	53.94
CDY47888	Canola	cytosol	52.48	53.64
Bra035662.1-P	Field mustard	cytosol	52.05	53.62
CDY65211	Canola	plastid	53.13	52.4
Bra011921.1-P	Field mustard	cytosol, plastid	52.92	52.29
KXG20764	Sorghum	mitochondrion	49.24	51.88
TraesCS7B01G322500.4	Wheat	plastid	49.68	51.34
TraesCS7A01G422100.3	Wheat	plastid	49.57	51.06
TraesCS7D01G414300.2	Wheat	plastid	49.35	51.0
HORVU7Hr1G097570.14	Barley	plastid	50.11	50.93
Zm00001d036484_P001	Maize	mitochondrion	49.35	47.55
KRH36143	Soybean	plastid	10.15	24.93
KRG90616	Soybean	nucleus, plastid	14.58	23.81
KRG97759	Soybean	plastid	14.9	23.43
KRG97758	Soybean	plastid	13.93	23.41

Protein Annotations

KEGG:00400+4.1.3.27	KEGG:00405+4.1.3.27	KEGG:00790+2.6.1.85	EntrezGene:100817174	Gene3D:3.60.120.10	MapMan:7.5.1.1
UniProt:A0A0R0EQ27	EMBL:ACUP02012712	InterPro:ADC_synthase	InterPro:Anth_synth_I_N	InterPro:Chorismate_C	InterPro:Class_I_gatase-like
InterPro:GATASE	EnsemblPlantsGene:GLYMA_20G179400	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006541	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009396	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0016740	GO:GO:0046654
GO:GO:0046820	InterPro:IPR005801	InterPro:IPR017926	InterPro:IPR029062	EnsemblPlants:KRG91886	ProteinID:KRG91886
ProteinID:KRG91886.1	PFAM:PF00117	PFAM:PF00425	PFAM:PF04715	PRINTS:PR00096	PRINTS:PR00097
PRINTS:PR00099	PFscan:PS51273	PANTHER:PTHR11236	PANTHER:PTHR11236:SF18	MetaCyc:PWY-5958	MetaCyc:PWY-6543
MetaCyc:PWY-6660	MetaCyc:PWY-6661	InterPro:Para-NH2Bz_synth_comp_1	SUPFAM:SSF52317	SUPFAM:SSF56322	TIGRFAMs:TIGR00553
UniParc:UPI0006ED595C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr20:-:41676365..41686127

Molecular Weight (calculated)

104146.0 Da

IEP (calculated)

6.647

GRAVY (calculated)

-0.314

Length

926 amino acids

Sequence
(BLAST)

001: MKYLTLFLAK MNSPLRLFSS ELTCPASESM QYTNSSLRVS CFIKKGGGVR VSNRNGRNAK AVVCCQLMHS HKEEESNERK RKLQEPVLVP VQKADFVRTL
101: LIDNYDSYTY NVYQELSIIN GVPPVVIQND DWTWEELCHY LYEENAFDNI VISPGPGSPA CPEDIGICLQ LLLKCWDIPI LGVCLGHQAL GYVHGAQIVH
201: ASEPIHGRLS EVEHNGCQLF HDIPSVVRYH SLVIDSESLP EELIPIAWTS STSTLPFIGS KDFGKFNTHE VQPDQSIFID PFLAKVGSGS SNQFDYGKTR
301: SARVLMGIKH STRPHYGVQF HPESVATCYG NQIFKNFREI TDDYWLRFRS SFKETHAHSN ACMQISSANR LYREVCRSIS AENNAVDQLK KIVHADRHLE
401: YNKAEMKHLE MFNMVNTPHA TTGSKCLKLK WRKFGHLAGQ VGGAKSIFCG LFGHEAENTF WLDSSSTEKG RARFSFMGGK GGSLWKHLMF RLSHQSDGSS
501: KGGGYLSTED SQGSAETIFL EEGFLDFLNK ELQSYHYGKN ECEGLPFDFH GGYVGYIGYD LKVECGVKSN RHKSKTPDAC FFFADNLVAI DHKNDDVYIL
601: AIHEESSSIT QWLDDTEEKL LSLNGSVRVA LEIQNSHPLT FYSCKAGLAA EKSREQYIED VKKCLNYIKD GESYELCLTT QIRKPIEELN SLGLYLHLRE
701: RNPAPYAAWL NFSKENLSIC CSSPERFLQL DRKNILEDKP IKGTIARGAT KEENELLKLK LQFSEKDQAE NLMIVDLLRN DLGRVCDPGS VHVPRLMDVE
801: SYATVHTMVS TIRGKKRSDV SAINCVKAAF PGGSMTGAPK LRSMELLDSI ESCSRGIYSG CIGFFSYNQR FDLNIVIRTV IIHEGEASIG AGGAIVALSN
901: PEDEYEEMVL KFCLELICQR NSFFLS

Best Arabidopsis Sequence Match ( AT2G28880.1 )
(BLAST)

001: MNMNFSFCST SSELSYPSEN VLRFSVASRL FSPKWKKSFI SLPCRSKTTR KVLASSRYVP GKLEDLSVVK KSLPRREPVE KLGFVRTLLI DNYDSYTFNI
101: YQALSTINGV PPVVIRNDEW TWEEAYHYLY EDVAFDNIVI SPGPGSPMCP ADIGICLRLL LECRDIPILG VCLGHQALGY VHGAHVVHAP EPVHGRLSGI
201: EHDGNILFSD IPSGRNSDFK VVRYHSLIID KESLPKELVP IAWTIYDDTG SFSEKNSCVP VNNTGSPLGN GSVIPVSEKL ENRSHWPSSH VNGKQDRHIL
301: MGIMHSSFPH YGLQFHPESI ATTYGSQLFK NFKDITVNYW SRCKSTSLRR RNINDTANMQ VPDATQLLKE LSRTRCTGNG SSYFGNPKSL FSAKTNGVDV
401: FDMVDSSYPK PHTKLLRLKW KKHERLAHKV GGVRNIFMEL FGKNRGNDTF WLDTSSSDKA RGRFSFMGGK GGSLWKQLTF SLSDQSEVTS KHAGHLLIED
501: SQSSTEKQFL EEGFLDFLRK ELSSISYDEK DFEELPFDFC GGYVGCIGYD IKVECGMPIN RHKSNAPDAC FFFADNVVAI DHQLDDVYIL SLYEEGTAET
601: SFLNDTEEKL ISLMGLSTRK LEDQTLPVID SSQSKTSFVP DKSREQYIND VQSCMKYIKD GESYELCLTT QNRRKIGNAD PLGLYLHLRE RNPAPYAAFL
701: NFSNANLSLC SSSPERFLKL DRNGMLEAKP IKGTIARGST PEEDEFLKLQ LKLSEKNQAE NLMIVDLLRN DLGRVCEPGS VHVPNLMDVE SYTTVHTMVS
801: TIRGLKKTDI SPVECVRAAF PGGSMTGAPK LRSVEILDSL ENCSRGLYSG SIGYFSYNGT FDLNIVIRTV IIHEDEASIG AGGAIVALSS PEDEFEEMIL
901: KTRAPANAVM EFCSDQRRQ

Arabidopsis Description

ADCSAminodeoxychorismate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.