CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47888	Canola	cytosol	86.37	89.51
CDY31739	Canola	cytosol	78.06	81.53
CDX77216	Canola	cytosol	76.36	80.74
AT2G28880.1	Thale cress	plastid	78.27	79.98
PGSC0003DMT400025330	Potato	cytosol	19.81	73.81
Os06t0699700-01	Rice	cytosol	22.26	62.95
VIT_13s0019g04170.t01	Wine grape	cytosol	53.78	60.26
KRH34882	Soybean	plastid	53.35	54.05
VIT_13s0019g04180.t01	Wine grape	cytosol	51.44	53.91
Solyc04g049360.2.1	Tomato	plastid	51.76	53.88
KRG91886	Soybean	mitochondrion	52.4	53.13
GSMUA_Achr3P05610_001	Banana	mitochondrion	47.82	52.27
KXG20764	Sorghum	mitochondrion	48.24	51.54
TraesCS7D01G414300.2	Wheat	plastid	48.14	50.45
TraesCS7B01G322500.4	Wheat	plastid	48.14	50.45
TraesCS7A01G422100.3	Wheat	plastid	47.92	50.06
HORVU7Hr1G097570.14	Barley	plastid	48.56	50.05
Zm00001d036484_P001	Maize	mitochondrion	48.24	47.14
CDY11333	Canola	plastid	16.29	25.76
CDX80970	Canola	plastid	16.29	25.76
CDX98861	Canola	plastid	15.97	25.21
CDX70133	Canola	plastid	15.87	24.96
CDX83311	Canola	plastid	16.61	24.8
CDX95746	Canola	plastid	16.29	24.48
CDY47655	Canola	cytosol	2.24	23.33
CDX83310	Canola	nucleus, plastid	7.45	13.78

Protein Annotations

KEGG:00400+4.1.3.27	KEGG:00405+4.1.3.27	KEGG:00790+2.6.1.85	Gene3D:3.60.120.10	MapMan:7.5.1.1	GO:A0A078JHP7
UniProt:A0A078JHP7	InterPro:ADC_synthase	InterPro:Anth_synth_I_N	EnsemblPlants:CDY65211	ProteinID:CDY65211	ProteinID:CDY65211.1
InterPro:Chorismate_C	InterPro:Class_I_gatase-like	InterPro:GATASE	GO:GO:0006541	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009396	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00045396001	InterPro:IPR005801	InterPro:IPR017926
InterPro:IPR029062	PFAM:PF00117	PFAM:PF00425	PFAM:PF04715	PRINTS:PR00096	PRINTS:PR00097
PRINTS:PR00099	PFscan:PS51273	PANTHER:PTHR11236	PANTHER:PTHR11236:SF18	MetaCyc:PWY-5958	MetaCyc:PWY-6543
MetaCyc:PWY-6660	MetaCyc:PWY-6661	InterPro:Para-NH2Bz_synth_comp_1	SUPFAM:SSF52317	SUPFAM:SSF56322	TIGRFAMs:TIGR00553
UniPathway:UPA00035	UniPathway:UPA00077	UniParc:UPI0004EE9264	SEG:seg	:	:

Description

BnaCnng46040DBnaCnng46040D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JHP7]

Coordinates

chrLK034694:+:22102..26204

Molecular Weight (calculated)

105190.0 Da

IEP (calculated)

6.222

GRAVY (calculated)

-0.353

Length

939 amino acids

Sequence
(BLAST)

001: MEPFEFVNFT LSDPSLLLSG ATNMNFSLCS TSSELACPSD CVMRSPVANR FLSREPVRFD ETWKKRKYFN TKKVFASTHI VPGHLEDSSS IAKKSLLPRR
101: EPVERLGFVR TLLIDNYDSY TFNIYQALST INGVPPVVIR NDEWTWEEAY RYLYEDAAFD NIVISPGPGS PMCPADIGRI CLRLLLECRD IPILGVCLGH
201: QALGYVHGAH VVHAPEPVHG RLSGIEHDGN ILFSDIPSGR NSDFKADKES LPKELIPIAW TVYDDTGSFS EKKFSTPVNT SLSPSRNASV ISVPETLENQ
301: SYWPSPHVDG KQDRHILMGI MHSTFPHYGL QFHPESIATT YGSQIFKNFK DVTVDYWSRY KSPSLRRRMI NETANMQVPS ACQLLKELSR TRNTGNGSSY
401: NNNNSSNSLS TAKKNGVDVF NLVDLAYAKP DTKLLRLKWK KLERLVHKVG GARNIFMELY GKNRGNDAFW LDTSSSDKAR GRFSFMGGKG GSLWKQLTFS
501: LSDQSEITSK HGGHLLIEDA HGSTEKRFLE EGFLDFLRKE LSSLSYEEKD FKGLPFDFCG GYVGCIGYDI KVECGMPINR HKSKAPDACF FLADNVIAID
601: HQLDDVYVLS LHELDTAETS FLNDTEEKLI TMSVSPTRKW KDQTLPAIDS SQRKASFVPD KSREQYINDV ERCMQYIKDG ESYELCLTTQ NRWRIENTDP
701: LGLYLHLREK NPAPYAAFLN FSNANLSLCC SSPERFLLLD RNGMLEAKPI KGTIARGSTP EEDELLKFEL KLSEKNQAEN LMIVDLLRND LGCVCEPGSV
801: HVPNLMDVET YTTVHTMVST VRGLKKTDIS PVECVRAAFP GGSMTGAPKL RSVEILDSLE NCSRGLYSGS IGYFSYNGTF DLNIVIRTVV IHEDEASIGA
901: GGAIVALSNP EDEFEEMILK TRAPANAVIE FCSGSSERH

Best Arabidopsis Sequence Match ( AT2G28880.1 )
(BLAST)

001: MNMNFSFCST SSELSYPSEN VLRFSVASRL FSPKWKKSFI SLPCRSKTTR KVLASSRYVP GKLEDLSVVK KSLPRREPVE KLGFVRTLLI DNYDSYTFNI
101: YQALSTINGV PPVVIRNDEW TWEEAYHYLY EDVAFDNIVI SPGPGSPMCP ADIGICLRLL LECRDIPILG VCLGHQALGY VHGAHVVHAP EPVHGRLSGI
201: EHDGNILFSD IPSGRNSDFK VVRYHSLIID KESLPKELVP IAWTIYDDTG SFSEKNSCVP VNNTGSPLGN GSVIPVSEKL ENRSHWPSSH VNGKQDRHIL
301: MGIMHSSFPH YGLQFHPESI ATTYGSQLFK NFKDITVNYW SRCKSTSLRR RNINDTANMQ VPDATQLLKE LSRTRCTGNG SSYFGNPKSL FSAKTNGVDV
401: FDMVDSSYPK PHTKLLRLKW KKHERLAHKV GGVRNIFMEL FGKNRGNDTF WLDTSSSDKA RGRFSFMGGK GGSLWKQLTF SLSDQSEVTS KHAGHLLIED
501: SQSSTEKQFL EEGFLDFLRK ELSSISYDEK DFEELPFDFC GGYVGCIGYD IKVECGMPIN RHKSNAPDAC FFFADNVVAI DHQLDDVYIL SLYEEGTAET
601: SFLNDTEEKL ISLMGLSTRK LEDQTLPVID SSQSKTSFVP DKSREQYIND VQSCMKYIKD GESYELCLTT QNRRKIGNAD PLGLYLHLRE RNPAPYAAFL
701: NFSNANLSLC SSSPERFLKL DRNGMLEAKP IKGTIARGST PEEDEFLKLQ LKLSEKNQAE NLMIVDLLRN DLGRVCEPGS VHVPNLMDVE SYTTVHTMVS
801: TIRGLKKTDI SPVECVRAAF PGGSMTGAPK LRSVEILDSL ENCSRGLYSG SIGYFSYNGT FDLNIVIRTV IIHEDEASIG AGGAIVALSS PEDEFEEMIL
901: KTRAPANAVM EFCSDQRRQ

Arabidopsis Description

ADCSAminodeoxychorismate synthase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LPN3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.