CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
extracellular 5
endoplasmic reticulum 4
vacuole 4
plasma membrane 6
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY36092	Canola	extracellular	76.57	78.54
CDY55954	Canola	extracellular	76.57	78.54
AT1G26100.1	Thale cress	plasma membrane	73.22	74.15
KRH75524	Soybean	extracellular, golgi, plasma membrane	61.92	62.45
KRH70628	Soybean	plasma membrane	61.92	61.16
VIT_01s0011g02840.t01	Wine grape	plasma membrane	59.41	58.68
Solyc05g009950.2.1	Tomato	plasma membrane	57.74	57.74
PGSC0003DMT400002104	Potato	plasma membrane	57.32	56.61
GSMUA_Achr8P29770_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	43.51	41.94
CDY01648	Canola	extracellular	37.24	38.7
CDX74514	Canola	extracellular	36.82	38.26
CDY50196	Canola	plasma membrane	33.89	34.47
CDY57373	Canola	plasma membrane	33.89	34.47
CDX92719	Canola	plasma membrane	33.89	34.47
CDX94439	Canola	extracellular	17.57	32.06
CDY27081	Canola	plasma membrane	27.62	28.33
CDX91626	Canola	plasma membrane	26.36	27.04
CDY41099	Canola	plasma membrane	25.1	26.79
CDY33743	Canola	plasma membrane	25.1	26.79
CDY45283	Canola	plasma membrane	24.69	26.34
CDX81667	Canola	plasma membrane	24.69	26.34

Protein Annotations

Gene3D:1.20.120.1770	MapMan:35.1	GO:A0A078G5C9	UniProt:A0A078G5C9	EnsemblPlants:CDY20529	ProteinID:CDY20529
ProteinID:CDY20529.1	InterPro:Cyt_b561/ferric_Rdtase_TM	GO:GO:0005575	GO:GO:0008150	GO:GO:0008152	GO:GO:0016020
GO:GO:0016021	GO:GO:0055114	EnsemblPlantsGene:GSBRNA2T00012645001	InterPro:IPR006593	PFAM:PF03188	PFscan:PS50939
PANTHER:PTHR10106	PANTHER:PTHR10106:SF20	SMART:SM00665	TMHMM:TMhelix	UniParc:UPI0004EE48EA	SEG:seg

Description

BnaC07g11960DBnaC07g11960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G5C9]

Coordinates

chrLK032109:-:23286..24567

Molecular Weight (calculated)

26481.0 Da

IEP (calculated)

10.525

GRAVY (calculated)

0.564

Length

239 amino acids

Sequence
(BLAST)

001: MRMGSDSLVV FARLLGLAIA VVVVYWFLLF KSSFAPRKGL TKTTIHALLM VIGFILVSGE AILIHRWLPG SKKTKKAVHL LLQGVALVSA VFGMWTKFHY
101: ESGIFSNFYS LHSWMGLLSI SLFAIQWVTG FLSFWHRGEA RETRSTLLPW HVFLGLYIYG LAIATAETGL LVKLTHLQTK RNLPRHCAES VVLNGVGLGL
201: VLLCAIVIAS AVLPKYQKSH SGNDKLVYSS QDHPKCLAS

Best Arabidopsis Sequence Match ( AT1G26100.1 )
(BLAST)

001: MGSVDPSRLS LVLFARLSGL VVAVSVLYWA LFLPNLGLSY STLHPLLMVI GFILVSGEAI LIHRWLPGSR KTKKAVHLWL QGMALASAVF GIWTKFHYQR
101: GVFANFYSLH SWMGLLSVSL FAAQWVTGFM SFWHRGEVRT TRTTFLPWHV FLGLYTYGLA IATAETGLLE KLTFLQTKRN VPRRGSESMT VNGLGLGLAL
201: LGCIVITAAI LPKYQSHSRD EKLVYSSQDR PKCLSS

Arabidopsis Description

CYB561DProbable transmembrane ascorbate ferrireductase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C540]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.