Subcellular Localization
min:
: max
Winner_takes_all: vacuole, peroxisome, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- vacuole 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93428 | Canola | golgi, nucleus, peroxisome | 75.39 | 81.2 |
| AT1G10417.4 | Thale cress | golgi | 63.31 | 64.17 |
| VIT_01s0026g01170.t01 | Wine grape | cytosol, mitochondrion | 23.94 | 58.79 |
| KRH69412 | Soybean | mitochondrion | 37.58 | 52.83 |
| KRH74731 | Soybean | mitochondrion | 36.91 | 51.72 |
| GSMUA_Achr6P01470_001 | Banana | endoplasmic reticulum, extracellular, nucleus | 17.23 | 30.68 |
| Os10t0411750-01 | Rice | cytosol, mitochondrion, nucleus | 7.38 | 30.28 |
| TraesCS7A01G231800.1 | Wheat | nucleus | 25.95 | 29.44 |
| TraesCSU01G104600.1 | Wheat | nucleus | 25.73 | 29.04 |
| TraesCS7B01G130300.1 | Wheat | nucleus | 25.5 | 28.93 |
| KXG38555 | Sorghum | cytosol | 25.06 | 28.21 |
| Zm00001d014189_P003 | Maize | cytosol, extracellular, nucleus | 4.47 | 11.56 |
Protein Annotations
| EnsemblPlants:CDY37980 | EnsemblPlantsGene:GSBRNA2T00065024001 | ncoils:Coil | ProteinID:CDY37980 | ProteinID:CDY37980.1 | SEG:seg |
| UniParc:UPI0004EE533C | UniProt:A0A078HHV5 | MapMan:35.2 | : | : | : |
Description
BnaC05g07940DBnaC05g07940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HHV5]
Coordinates
chrLK032413:+:269977..273074
Molecular Weight (calculated)
51436.7 Da
IEP (calculated)
5.228
GRAVY (calculated)
-0.649
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLKLSKFK LQLQSMIGEV RDLRERERSV TDHLNLINQK QKHTEEESSR KVHELESEIA SSRESQEALE RKVSYLQNDY SLLENKQNEL KNTIQNLLQS
101: RESFLNAYQE SFSEMRCSVE ARDRNIAILH QKITSHLALF DSIEKEASAI KNVIQEVQGL VDQKEDVGII LMRSNGFLSP VAGLKGKMDH VSTYEKVFIE
201: KIRTLEEKIE YLEAELQSKD NRISEFCAQL EEAKMKNEYQ LQIEEISMIE FKFFTARELP YFQKTLKVKD LVVENLVSEK EALHSEVRSL EMILLRIQES
301: VTLMTEEDRR VFTSILTYEQ GADERNNHSR YNDTVDKTEE LACEAPILGS QENSVNVISS ASPRCPHQNT GCSLVQNADH RLDSAQSLQH NTVSGHGQST
401: NNNDHFDPKA SKKKTLFSFN IIVVNVLQDK CKELTNQPDS ECSTNRV
101: RESFLNAYQE SFSEMRCSVE ARDRNIAILH QKITSHLALF DSIEKEASAI KNVIQEVQGL VDQKEDVGII LMRSNGFLSP VAGLKGKMDH VSTYEKVFIE
201: KIRTLEEKIE YLEAELQSKD NRISEFCAQL EEAKMKNEYQ LQIEEISMIE FKFFTARELP YFQKTLKVKD LVVENLVSEK EALHSEVRSL EMILLRIQES
301: VTLMTEEDRR VFTSILTYEQ GADERNNHSR YNDTVDKTEE LACEAPILGS QENSVNVISS ASPRCPHQNT GCSLVQNADH RLDSAQSLQH NTVSGHGQST
401: NNNDHFDPKA SKKKTLFSFN IIVVNVLQDK CKELTNQPDS ECSTNRV
001: MEMLKLSKFK LQLQSMIGEV RDLRVRRKRF LYIYGLCIFF APPVSLFFFF VFFHFTTGVF AGKGAISHRS HYSCESGSSI NKQKQTEEDC IRKVQELQAD
101: LASSRETQEA LERKVSYLQN DYSLLENKQS ELKTTIQNLL QSRESFLNAY QESFCEMKCS IEARDRKILM LHEKITSHLT LFDSIEKEAS VIKKVIHEVQ
201: GLVDKKEDVV TGLKEKMDHV STYEKVFIEN IRALEEKLKC HETELQSKDN IISELSAQLE SEKSKNEHQH QVEELQKTLQ VKDLAVENLI SEKEALYSEM
301: KGLEMILQRI QESVSLMTEE DRKVFTSILT FEQGSDERNK RSRHNDTVDK MEELLYVAPV MHSQENSVKV IPSASPRCQH QKTDCRSIQD DDHQLDSAEY
401: LQHNTVSGHW QSTNNHNHFE LEDKYKELMN QPDSECSTNR V
101: LASSRETQEA LERKVSYLQN DYSLLENKQS ELKTTIQNLL QSRESFLNAY QESFCEMKCS IEARDRKILM LHEKITSHLT LFDSIEKEAS VIKKVIHEVQ
201: GLVDKKEDVV TGLKEKMDHV STYEKVFIEN IRALEEKLKC HETELQSKDN IISELSAQLE SEKSKNEHQH QVEELQKTLQ VKDLAVENLI SEKEALYSEM
301: KGLEMILQRI QESVSLMTEE DRKVFTSILT FEQGSDERNK RSRHNDTVDK MEELLYVAPV MHSQENSVKV IPSASPRCQH QKTDCRSIQD DDHQLDSAEY
401: LQHNTVSGHW QSTNNHNHFE LEDKYKELMN QPDSECSTNR V
Arabidopsis Description
Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens. [Source:TAIR;Acc:AT1G10417]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.