Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019936.1-P | Field mustard | nucleus | 73.49 | 90.5 |
| CDY37980 | Canola | nucleus, peroxisome, vacuole | 81.2 | 75.39 |
| AT1G10417.4 | Thale cress | golgi | 65.54 | 61.68 |
| VIT_01s0026g01170.t01 | Wine grape | cytosol, mitochondrion | 26.27 | 59.89 |
| KRH69412 | Soybean | mitochondrion | 37.83 | 49.37 |
| KRH74731 | Soybean | mitochondrion | 37.35 | 48.59 |
| GSMUA_Achr6P01470_001 | Banana | endoplasmic reticulum, extracellular, nucleus | 18.31 | 30.28 |
| Os10t0411750-01 | Rice | cytosol, mitochondrion, nucleus | 7.95 | 30.28 |
| TraesCS7A01G231800.1 | Wheat | nucleus | 26.27 | 27.66 |
| TraesCSU01G104600.1 | Wheat | nucleus | 25.78 | 27.02 |
| TraesCS7B01G130300.1 | Wheat | nucleus | 25.54 | 26.9 |
| KXG38555 | Sorghum | cytosol | 23.61 | 24.69 |
| Zm00001d014189_P003 | Maize | cytosol, extracellular, nucleus | 4.82 | 11.56 |
Protein Annotations
| EnsemblPlants:CDX93428 | EnsemblPlantsGene:GSBRNA2T00156093001 | ncoils:Coil | ProteinID:CDX93428 | ProteinID:CDX93428.1 | SEG:seg |
| UniParc:UPI0004EEC514 | MapMan:35.2 | : | : | : | : |
Description
BnaA06g06200D
Coordinates
chrLK031876:+:158655..161760
Molecular Weight (calculated)
47973.5 Da
IEP (calculated)
5.532
GRAVY (calculated)
-0.694
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: MELLKLSKFK LQLQSMIGEV RDLRERERSV TDHLNLINQK QKQTEEECSR KVHELESELA SSRETQEALE RKVSYLQNDY SLLENKQNEL KNTIQNLLQS
101: RESFLNAYQE SFSEMRCSVE ARDRKIAILH QKITSHLALF DSIEKEASAI KNVIQEVQGL VDQKEDVGMW IPRLLLFFCL AGLRERMDHV STYEKVFVEK
201: ISTLEEKIES EDEKRISTSN RRDIHDRVLI FLLQGNFPYF QKTLKVKDLV VENLVSEKEA LHSEVRSLEM ILLRIQESVT LMTEEDRRVF TSILTYEQGA
301: DDRNNNSRYN DTVDKTEELA CEAPIVGSQE NSVNVISSAS PRCPHQNTGC SLVQDADHRL NSAQSLQHNT VSGHRQSTNN NDHFDTKASK KNAFLFDKCK
401: ELTNQPDSEC STNRV
101: RESFLNAYQE SFSEMRCSVE ARDRKIAILH QKITSHLALF DSIEKEASAI KNVIQEVQGL VDQKEDVGMW IPRLLLFFCL AGLRERMDHV STYEKVFVEK
201: ISTLEEKIES EDEKRISTSN RRDIHDRVLI FLLQGNFPYF QKTLKVKDLV VENLVSEKEA LHSEVRSLEM ILLRIQESVT LMTEEDRRVF TSILTYEQGA
301: DDRNNNSRYN DTVDKTEELA CEAPIVGSQE NSVNVISSAS PRCPHQNTGC SLVQDADHRL NSAQSLQHNT VSGHRQSTNN NDHFDTKASK KNAFLFDKCK
401: ELTNQPDSEC STNRV
001: MEMLKLSKFK LQLQSMIGEV RDLRVRRKRF LYIYGLCIFF APPVSLFFFF VFFHFTTGVF AGKGAISHRS HYSCESGSSI NKQKQTEEDC IRKVQELQAD
101: LASSRETQEA LERKVSYLQN DYSLLENKQS ELKTTIQNLL QSRESFLNAY QESFCEMKCS IEARDRKILM LHEKITSHLT LFDSIEKEAS VIKKVIHEVQ
201: GLVDKKEDVV TGLKEKMDHV STYEKVFIEN IRALEEKLKC HETELQSKDN IISELSAQLE SEKSKNEHQH QVEELQKTLQ VKDLAVENLI SEKEALYSEM
301: KGLEMILQRI QESVSLMTEE DRKVFTSILT FEQGSDERNK RSRHNDTVDK MEELLYVAPV MHSQENSVKV IPSASPRCQH QKTDCRSIQD DDHQLDSAEY
401: LQHNTVSGHW QSTNNHNHFE LEDKYKELMN QPDSECSTNR V
101: LASSRETQEA LERKVSYLQN DYSLLENKQS ELKTTIQNLL QSRESFLNAY QESFCEMKCS IEARDRKILM LHEKITSHLT LFDSIEKEAS VIKKVIHEVQ
201: GLVDKKEDVV TGLKEKMDHV STYEKVFIEN IRALEEKLKC HETELQSKDN IISELSAQLE SEKSKNEHQH QVEELQKTLQ VKDLAVENLI SEKEALYSEM
301: KGLEMILQRI QESVSLMTEE DRKVFTSILT FEQGSDERNK RSRHNDTVDK MEELLYVAPV MHSQENSVKV IPSASPRCQH QKTDCRSIQD DDHQLDSAEY
401: LQHNTVSGHW QSTNNHNHFE LEDKYKELMN QPDSECSTNR V
Arabidopsis Description
Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens. [Source:TAIR;Acc:AT1G10417]
SUBAcon: [golgi]
SUBAcon: [golgi]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.