Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- nucleus 3
- golgi 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra019936.1-P | Field mustard | nucleus | 54.65 | 71.51 |
| CDX93428 | Canola | golgi, nucleus, peroxisome | 61.68 | 65.54 |
| CDY37980 | Canola | nucleus, peroxisome, vacuole | 64.17 | 63.31 |
| VIT_01s0026g01170.t01 | Wine grape | cytosol, mitochondrion | 23.13 | 56.04 |
| KRH69412 | Soybean | mitochondrion | 36.28 | 50.31 |
| KRH74731 | Soybean | mitochondrion | 35.83 | 49.53 |
| GSMUA_Achr6P01470_001 | Banana | endoplasmic reticulum, extracellular, nucleus | 18.82 | 33.07 |
| TraesCS7A01G231800.1 | Wheat | nucleus | 27.21 | 30.46 |
| TraesCSU01G104600.1 | Wheat | nucleus | 26.76 | 29.8 |
| TraesCS7B01G130300.1 | Wheat | nucleus | 26.53 | 29.7 |
| Os10t0411750-01 | Rice | cytosol, mitochondrion, nucleus | 6.58 | 26.61 |
| KXG38555 | Sorghum | cytosol | 23.36 | 25.94 |
| Zm00001d014189_P003 | Maize | cytosol, extracellular, nucleus | 4.54 | 11.56 |
Protein Annotations
| ArrayExpress:AT1G10417 | EnsemblPlants:AT1G10417.4 | EnsemblPlantsGene:AT1G10417 | EntrezGene:3766692 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | ncoils:Coil | ProteinID:ANM59727.1 | RefSeq:AT1G10417 | RefSeq:AT1G10417-TAIR-G | RefSeq:NP_001322064.1 |
| SEG:seg | TAIR:AT1G10417 | TMHMM:TMhelix | Unigene:At.51554 | UniParc:UPI0008492A3F | UniProt:A0A1P8ASY5 |
| MapMan:35.2 | : | : | : | : | : |
Description
Encodes protein with unknown function whose expression is repressed by inoculation with Agrobacterium tumerifaciens. [Source:TAIR;Acc:AT1G10417]
Coordinates
chr1:-:3424186..3427457
Molecular Weight (calculated)
51394.0 Da
IEP (calculated)
6.047
GRAVY (calculated)
-0.659
Length
441 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMLKLSKFK LQLQSMIGEV RDLRVRRKRF LYIYGLCIFF APPVSLFFFF VFFHFTTGVF AGKGAISHRS HYSCESGSSI NKQKQTEEDC IRKVQELQAD
101: LASSRETQEA LERKVSYLQN DYSLLENKQS ELKTTIQNLL QSRESFLNAY QESFCEMKCS IEARDRKILM LHEKITSHLT LFDSIEKEAS VIKKVIHEVQ
201: GLVDKKEDVV TGLKEKMDHV STYEKVFIEN IRALEEKLKC HETELQSKDN IISELSAQLE SEKSKNEHQH QVEELQKTLQ VKDLAVENLI SEKEALYSEM
301: KGLEMILQRI QESVSLMTEE DRKVFTSILT FEQGSDERNK RSRHNDTVDK MEELLYVAPV MHSQENSVKV IPSASPRCQH QKTDCRSIQD DDHQLDSAEY
401: LQHNTVSGHW QSTNNHNHFE LEDKYKELMN QPDSECSTNR V
101: LASSRETQEA LERKVSYLQN DYSLLENKQS ELKTTIQNLL QSRESFLNAY QESFCEMKCS IEARDRKILM LHEKITSHLT LFDSIEKEAS VIKKVIHEVQ
201: GLVDKKEDVV TGLKEKMDHV STYEKVFIEN IRALEEKLKC HETELQSKDN IISELSAQLE SEKSKNEHQH QVEELQKTLQ VKDLAVENLI SEKEALYSEM
301: KGLEMILQRI QESVSLMTEE DRKVFTSILT FEQGSDERNK RSRHNDTVDK MEELLYVAPV MHSQENSVKV IPSASPRCQH QKTDCRSIQD DDHQLDSAEY
401: LQHNTVSGHW QSTNNHNHFE LEDKYKELMN QPDSECSTNR V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.