CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30927	Canola	cytosol	76.43	24.25
CDY43878	Canola	cytosol	39.73	12.92
CDY62690	Canola	cytosol	39.73	12.91
CDY32722	Canola	cytosol	39.06	12.62
CDY58574	Canola	cytosol	39.06	12.61
CDX88659	Canola	cytosol	39.06	12.55
CDY02797	Canola	cytosol	38.38	12.42
CDX77857	Canola	cytosol	2.69	1.1
GSMUA_Achr5P03970_001	Banana	cytosol	0.67	0.56
CDY25216	Canola	cytosol	0.67	0.53
CDY22830	Canola	cytosol, plastid	0.67	0.53
CDY06386	Canola	nucleus, plastid	0.67	0.5
CDY19600	Canola	plastid	0.67	0.5
CDY68493	Canola	cytosol	0.34	0.41
CDY71460	Canola	cytosol	0.34	0.41
CDY00833	Canola	cytosol	0.34	0.24
CDY27899	Canola	cytosol	0.34	0.24
CDX99190	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.30.450.20	MapMan:35.1	GO:A0A078JS38	UniProt:A0A078JS38	EnsemblPlants:CDY70398	ProteinID:CDY70398
ProteinID:CDY70398.1	GO:GO:0000155	GO:GO:0000160	GO:GO:0003674	GO:GO:0003824	GO:GO:0004871
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0023014	GO:GO:0038023	EnsemblPlantsGene:GSBRNA2T00003138001	InterPro:IPR000014	InterPro:IPR000700	InterPro:PAS
InterPro:PAS-assoc_C	InterPro:PAS-like_dom_sf	PFAM:PF13426	PFscan:PS50112	PFscan:PS50113	PANTHER:PTHR24351
PANTHER:PTHR24351:SF173	SUPFAM:SSF55785	TIGRFAMs:TIGR00229	UniParc:UPI0004EAFD44	SEG:seg	:

Description

BnaCnng68200DBnaCnng68200D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JS38]

Coordinates

chrLK041977:-:1204..2527

Molecular Weight (calculated)

32268.9 Da

IEP (calculated)

8.780

GRAVY (calculated)

-0.658

Length

297 amino acids

Sequence
(BLAST)

001: MEPAEKPSIK PSSRTLPRDT RGSLEVFNPS TFPTRPDNPV FRPEPPTWQN WSDPRDSPQP QIQPLSEPAP SIPVRSEEIA VTTSWMALKD PSPEKISKKT
101: ITTEKPQVAA VAAEQRAAEW GLVLKTDTKT GKPQGVSVRN SGGAENDPNG KKTSQRNSSN SCRSSGEMSD GDVAGGRGGI PRVSEDLKDA LSTFQQTFVV
201: SDATKPDYPI MYASAGFFNM TGYTSKEVVG RNCRFLQGSG TDADELAKIR ESLAAGNNYC GRLLNYKKDG TSFWNLLTIA PIKDESGKVL KFIGLVL

Best Arabidopsis Sequence Match ( AT3G45780.1 )
(BLAST)

001: MEPTEKPSTK PSSRTLPRDT RGSLEVFNPS TQLTRPDNPV FRPEPPAWQN LSDPRGTSPQ PRPQQEPAPS NPVRSDQEIA VTTSWMALKD PSPETISKKT
101: ITAEKPQKSA VAAEQRAAEW GLVLKTDTKT GKPQGVGVRN SGGTENDPNG KKTTSQRNSQ NSCRSSGEMS DGDVPGGRSG IPRVSEDLKD ALSTFQQTFV
201: VSDATKPDYP IMYASAGFFN MTGYTSKEVV GRNCRFLQGS GTDADELAKI RETLAAGNNY CGRILNYKKD GTSFWNLLTI APIKDESGKV LKFIGMQVEV
301: SKHTEGAKEK ALRPNGLPES LIRYDARQKD MATNSVTELV EAVKRPRALS ESTNLHPFMT KSESDELPKK PARRMSENVV PSGRRNSGGG RRNSMQRINE
401: IPEKKSRKSS LSFMGIKKKS ESLDESIDDG FIEYGEEDDE ISDRDERPES VDDKVRQKEM RKGIDLATTL ERIEKNFVIT DPRLPDNPII FASDSFLELT
501: EYSREEILGR NCRFLQGPET DLTTVKKIRN AIDNQTEVTV QLINYTKSGK KFWNIFHLQP MRDQKGEVQY FIGVQLDGSK HVEPVRNVIE ETAVKEGEDL
601: VKKTAVNIDE AVRELPDANM TPEDLWANHS KVVHCKPHRK DSPPWIAIQK VLESGEPIGL KHFKPVKPLG SGDTGSVHLV ELVGTDQLFA MKAMDKAVML
701: NRNKVHRARA EREILDLLDH PFLPALYASF QTKTHICLIT DYYPGGELFM LLDRQPRKVL KEDAVRFYAA QVVVALEYLH CQGIIYRDLK PENVLIQGNG
801: DISLSDFDLS CLTSCKPQLL IPSIDEKKKK KQQKSQQTPI FMAEPMRASN SFVGTEEYIA PEIISGAGHT SAVDWWALGI LMYEMLYGYT PFRGKTRQKT
901: FTNVLQKDLK FPASIPASLQ VKQLIFRLLQ RDPKKRLGCF EGANEVKQHS FFKGINWALI RCTNPPELET PIFSGEAENG EKVVDPELED LQTNVF

Arabidopsis Description

PHOT1RPT1 [Source:UniProtKB/TrEMBL;Acc:A0A178VFT4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.