CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68493	Canola	cytosol	91.8	91.8
PGSC0003DMT400015050	Potato	cytosol	45.08	52.88
Bra033907.1-P	Field mustard	cytosol	31.97	49.06
CDX99190	Canola	cytosol	48.36	40.97
CDY25216	Canola	cytosol	34.84	22.37
CDY22830	Canola	cytosol, plastid	34.43	22.11
CDY19600	Canola	plastid	35.66	21.59
CDY06386	Canola	nucleus, plastid	35.25	21.45
CDY27899	Canola	cytosol	34.84	20.58
CDY00833	Canola	cytosol	34.43	20.54
CDX77857	Canola	cytosol	38.11	12.76
CDY02797	Canola	cytosol	41.39	11.0
CDY58574	Canola	cytosol	41.39	10.98
CDX88659	Canola	cytosol	41.39	10.93
CDY32722	Canola	cytosol	40.98	10.88
CDY62690	Canola	cytosol	40.16	10.72
CDY43878	Canola	cytosol	39.75	10.62
CDY30927	Canola	cytosol	38.11	9.94
CDY70398	Canola	nucleus, plastid	0.41	0.34

Protein Annotations

Gene3D:1.10.510.10	MapMan:18.4.6.5	Gene3D:3.30.200.20	GO:A0A078JYH1	UniProt:A0A078JYH1	EnsemblPlants:CDY71460
ProteinID:CDY71460	ProteinID:CDY71460.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0004672
GO:GO:0005488	GO:GO:0005524	GO:GO:0006464	GO:GO:0006468	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00015068001	InterPro:IPR000719
InterPro:Kinase-like_dom_sf	PFAM:PF00069	ScanProsite:PS00108	PFscan:PS50011	PANTHER:PTHR24351	PANTHER:PTHR24351:SF55
InterPro:Prot_kinase_dom	SMART:SM00220	SUPFAM:SSF56112	InterPro:Ser/Thr_kinase_AS	UniParc:UPI0004EE4875	SEG:seg

Description

BnaCnng72980DBnaCnng72980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JYH1]

Coordinates

chrLK045937:+:288..1800

Molecular Weight (calculated)

27137.1 Da

IEP (calculated)

6.094

GRAVY (calculated)

-0.345

Length

244 amino acids

Sequence
(BLAST)

001: MLGIVYRDLK PENVLVRDDG HIMLSDFDLS LRCSVNPTLV NSSSGGGSGP STFFPRILQS TRKNRKAKSD FGLFVNGSMP ELMAEPTNVK SMSFVGTHEY
101: LAPEIIRGEG HGSAVDWWTL GIFIYELLYG STPFKGQENR ATLHNVIKQA LRFPDLPHVS SAARDLIKGL LVKEPQKRIA YKRGATEIKQ HPFFEGVNWA
201: LIRSATPPHI PEPVDFTAFA KSEEEFDASD DDHCTDIVEN SNDS

Best Arabidopsis Sequence Match ( AT1G16440.1 )
(BLAST)

001: MLLKPGNKLV SPETSHHRDS ASNSSNHKCQ QQKPRKDKQK QVEQNTKKIE EHQIKSESTL LISNHNVNMS SQSNNSESTS TNNSSKPHTG GDIRWDAVNS
101: LKSRGIKLGI SDFRVLKRLG YGDIGSVYLV ELKGANPTTY FAMKVMDKAS LVSRNKLLRA QTEREILSQL DHPFLPTLYS HFETDKFYCL VMEFCSGGNL
201: YSLRQKQPNK CFTEDAARFF ASEVLLALEY LHMLGIVYRD LKPENVLVRD DGHIMLSDFD LSLRCSVNPT LVKSFNGGGT TGIIDDNAAV QGCYQPSAFF
301: PRMLQSSKKN RKSKSDFDGS LPELMAEPTN VKSMSFVGTH EYLAPEIIKN EGHGSAVDWW TFGIFIYELL HGATPFKGQG NKATLYNVIG QPLRFPEYSQ
401: VSSTAKDLIK GLLVKEPQNR IAYKRGATEI KQHPFFEGVN WALIRGETPP HLPEPVDFSC YVKKEKESLP PAATEKKSKM FDEANKSGSD PDYIVFEYF

Arabidopsis Description

RHS3Serine/threonine-protein kinase RHS3 [Source:UniProtKB/Swiss-Prot;Acc:F4I4F2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.