CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

nucleus 1
cytosol 1
plasma membrane 1
mitochondrion 1
vacuole 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028228_P001	Maize	cytosol, plasma membrane, vacuole	86.37	88.25
HORVU4Hr1G067510.5	Barley	cytosol, peroxisome, plasma membrane	83.54	85.05
Os03t0216700-01	Rice	plasma membrane, vacuole	85.31	84.41
TraesCS4A01G066800.1	Wheat	cytosol, plasma membrane, vacuole	82.12	83.91
TraesCS4B01G244400.1	Wheat	cytosol, plasma membrane, vacuole	82.12	83.91
TraesCS4D01G245000.1	Wheat	plasma membrane	82.12	83.91
GSMUA_Achr8P31410_001	Banana	cytosol, peroxisome, plasma membrane	66.73	76.47
OQU88105	Sorghum	cytosol, peroxisome, plasma membrane	66.9	63.0
EES14441	Sorghum	plasma membrane	53.1	57.14
KXG27560	Sorghum	plastid	36.64	38.19
KXG22777	Sorghum	plastid	35.75	36.53
KXG32398	Sorghum	plastid	33.81	35.17
KXG36122	Sorghum	mitochondrion, plasma membrane	34.34	33.28
OQU84246	Sorghum	plasma membrane	17.52	23.35

Protein Annotations

MapMan:24.2.4.1.3	MapMan:25.4.6.1	EntrezGene:8085298	UniProt:C5WSR5	EnsemblPlants:EER92636	ProteinID:EER92636
ProteinID:EER92636.1	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0006855
GO:GO:0008150	GO:GO:0015238	GO:GO:0015297	GO:GO:0016020	GO:GO:0016021	GO:GO:0055085
InterPro:MATE_fam	PFAM:PF01554	PANTHER:PTHR42893	PANTHER:PTHR42893:SF5	EnsemblPlantsGene:SORBI_3001G454900	TIGRFAMs:TIGR00797
TMHMM:TMhelix	UniParc:UPI0001A82810	RefSeq:XP_002465638.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr1:+:73110347..73119985

Molecular Weight (calculated)

59322.0 Da

IEP (calculated)

7.602

GRAVY (calculated)

0.618

Length

565 amino acids

Sequence
(BLAST)

001: MEDNGAAAAN AAPATSMLPA AEKHVAIPDD AAAAAAATNA TAGEENKVEE EDAPEPALLA CGPRKTGLHL FVMNIRSVFK LDDLGSEVLR IAVPASLALA
101: ADPLASLVDT AFIGRLGSVE IAAVGVSIAI FNQVSKVCIY PLVSVTTSFV AEEDAIISKA IEEKSSQDLE KASHVDSETN NLPASGPDLA ECVNSCIPTE
201: CTDLPNQGCK KRYIPSVTSA LIVGSILGLL QAVFLVFSAK FVLNIMGVKS GSPMQKPAVR YLTIRSLGAP AVLLSLAMQG VFRGFKDTKT PLYATVVGDA
301: ANIILDPILM FVCHMGVTGA AIAHVVSQYL ITLILLCRLV QQVDVIPPSI KSLKFGRFLG CGFLLLARVV AVTFCVTLAA SLAARHGPTI MAGFQICCQL
401: WLATSLLADG LAVAGQAVLA SAFAKNDKKK VVAATSRVLQ LSIVLGMGLT VVLGLAMRFG AGIFTSDLPV IEVIHKGIPF VAGTQTINSL AFVFDGINFG
501: ASDYTYSAYS MVAVASVSIP CLVYLSVHNG FIGIWIALTI YMSLRTIAST WRMGAARGPW KFLRK

Best Arabidopsis Sequence Match ( AT1G51340.2 )
(BLAST)

001: MMSEDGYNTD FPRNPLYIFF SDFRSVLKFD ELGLEIARIA LPAALALTAD PIASLVDTAF IGQIGPVELA AVGVSIALFN QVSRIAIFPL VSITTSFVAE
101: EDACSSQQDT VRDHKECIEI GINNPTEETI ELIPEKHKDS LSDEFKTSSS IFSISKPPAK KRNIPSASSA LIIGGVLGLF QAVFLISAAK PLLSFMGVKH
201: DSPMMRPSQR YLSLRSLGAP AVLLSLAAQG VFRGFKDTTT PLFATVIGDV TNIILDPIFI FVFRLGVTGA ATAHVISQYL MCGILLWKLM GQVDIFNMST
301: KHLQFCRFMK NGFLLLMRVI AVTFCVTLSA SLAAREGSTS MAAFQVCLQV WLATSLLADG YAVAGQAILA SAFAKKDYKR AAATASRVLQ LGLVLGFVLA
401: VILGAGLHFG ARVFTKDDKV LHLISIGLPF VAGTQPINAL AFVFDGVNFG ASDFGYAAAS LVMVAIVSIL CLLFLSSTHG FIGLWFGLTI YMSLRAAVGF
501: WRIGTGTGPW SFLRS

Arabidopsis Description

DTX42Protein DETOXIFICATION [Source:UniProtKB/TrEMBL;Acc:A0A178W9H8]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.