CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0080g00950.t01	Wine grape	cytosol	23.39	66.12
EES05473	Sorghum	cytosol	63.74	62.64
GSMUA_Achr8P13970_001	Banana	plastid	63.45	62.54
EES05474	Sorghum	cytosol	64.91	61.5
KXG30695	Sorghum	cytosol	64.91	61.16
AT5G22300.1	Thale cress	cytosol, peroxisome, plastid	59.94	57.75
Bra020184.1-P	Field mustard	cytosol	58.77	56.3
CDY09130	Canola	cytosol	58.77	56.3
CDY35679	Canola	cytosol	58.19	55.9

Protein Annotations

Gene3D:3.60.110.10	MapMan:9.5.2.5	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	UniProt:C5YCH4	EnsemblPlants:EES12535
ProteinID:EES12535	ProteinID:EES12535.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0004185	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0016810
GO:GO:0019538	GO:GO:0051603	InterPro:IPR003010	InterPro:IPR036526	PFAM:PF00795	PFscan:PS50263
PANTHER:PTHR23088	PANTHER:PTHR23088:SF31	EnsemblPlantsGene:SORBI_3006G153700	SUPFAM:SSF56317	unigene:Sbi.6278	UniParc:UPI00081AC118
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:51377479..51380248

Molecular Weight (calculated)

36816.7 Da

IEP (calculated)

4.878

GRAVY (calculated)

-0.062

Length

342 amino acids

Sequence
(BLAST)

001: MEEGFVEVDM NAGDEPAAFP TVRATVVQAS SVFFDTPATI EKAKKLIADA AEQGAQLVVF PEVFVGGFPR GSDFGVTIGG PPQAKGRKGK DLFCKYYASA
101: IDVPGPETNR LASFAAEYNV YLVMGAVERH GHGRTLYNTV LFFSPAGELL GRHRKLVPTA LERVLWGCGD GSTLSLYDTP IGRVGALVCW ESKMPLARAA
201: LYGKGLEIYC VPTADDSDLW QASVRHVAHE GGCFLLSANQ FCRRKDYPPP PEYAFTGFDE EPKPDDVLCR GGSVIVSPSG AVLAGPKYDG EGLLTADLDF
301: SEIVRAKFDF DVVGHSSRPE VLTLVVKDQP QVPVVYTSAS PN

Best Arabidopsis Sequence Match ( AT5G22300.1 )
(BLAST)

001: MSMQQETSHM TAAPQTNGHQ IFPEIDMSAG DSSSIVRATV VQASTVFYDT PATLDKAERL LSEAAENGSQ LVVFPEAFIG GYPRGSTFEL AIGSRTAKGR
101: DDFRKYHASA IDVPGPEVER LALMAKKYKV YLVMGVIERE GYTLYCTVLF FDSQGLFLGK HRKLMPTALE RCIWGFGDGS TIPVFDTPIG KIGAAICWEN
201: RMPSLRTAMY AKGIEIYCAP TADSRETWLA SMTHIALEGG CFVLSANQFC RRKDYPSPPE YMFSGSEESL TPDSVVCAGG SSIISPLGIV LAGPNYRGEA
301: LITADLDLGD IARAKFDFDV VGHYSRPEVF SLNIREHPRK AVSFKTSKVM EDESV

Arabidopsis Description

NIT4Bifunctional nitrilase/nitrile hydratase NIT4 [Source:UniProtKB/Swiss-Prot;Acc:P46011]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.