CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051214_P001	Maize	cytosol	96.68	96.68
Os02t0635200-01	Rice	plasma membrane	91.69	91.44
TraesCS6D01G215400.2	Wheat	cytosol	91.14	90.38
TraesCS6B01G260700.2	Wheat	cytosol	91.14	90.38
TraesCS6B01G261000.1	Wheat	cytosol	90.03	90.28
TraesCS6A01G232500.1	Wheat	cytosol	90.58	89.84
TraesCS6A01G232300.1	Wheat	cytosol	89.47	89.72
GSMUA_Achr8P13970_001	Banana	plastid	77.56	80.69
EES05473	Sorghum	cytosol	73.96	76.72
VIT_06s0080g00950.t01	Wine grape	cytosol	24.65	73.55
KXG30695	Sorghum	cytosol	73.68	73.28
HORVU6Hr1G059730.3	Barley	plastid	88.64	71.27
CDY35679	Canola	cytosol	69.81	70.79
CDY09130	Canola	cytosol	69.53	70.31
Bra020184.1-P	Field mustard	cytosol	68.98	69.75
AT5G22300.1	Thale cress	cytosol, peroxisome, plastid	68.14	69.3
EES12535	Sorghum	cytosol	61.5	64.91

Protein Annotations

Gene3D:3.60.110.10	EntrezGene:8074793	MapMan:9.5.2.5	InterPro:C-N_Hydrolase	InterPro:C-N_Hydrolase_sf	UniProt:C5XY71
ProteinID:CTQ87324.1	EnsemblPlants:EES05474	ProteinID:EES05474	ProteinID:EES05474.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016810	InterPro:IPR003010
InterPro:IPR036526	InterPro:Nitrilase/CN_hydratase_CS	PFAM:PF00795	ScanProsite:PS00920	ScanProsite:PS00921	PFscan:PS50263
PANTHER:PTHR23088	PANTHER:PTHR23088:SF31	EnsemblPlantsGene:SORBI_3004G225200	SUPFAM:SSF56317	unigene:Sbi.3721	UniParc:UPI0001A8543D
RefSeq:XP_002452498.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:57551584..57555520

Molecular Weight (calculated)

38567.2 Da

IEP (calculated)

5.236

GRAVY (calculated)

0.033

Length

361 amino acids

Sequence
(BLAST)

001: MALVPSGSGA GQVIAEVAMN GGADPNATTV RATVVQASTI FHDTPATLDK AERLIAEAAG YGSQLVVFPE AFIGGYPRGS TFGFGISISI INPKDKGKEA
101: FRRYHAAAID VPGPEVTRLA AMAGKYKVFL VMGVIEREGY TLYCSVLFFD PLGRYLGKHR KLMPTALERI IWGFGDGSTI PVYDTPLGKI GALICWENKM
201: PLLRTALYGK GIEIYCAPTA DSRPVWQASM THIALEGGCF VLSANQFCRR KDYPPPPEYE FAGLGEEPSA DTVVCSGGSV IISPSGEVLA GPNYEGEALI
301: TADLDLGEIV RAKFDFDVVG HYSRPEVLSL VVNDQPHLPV SFTSAGEKTP AAKSDSDAKS Y

Best Arabidopsis Sequence Match ( AT5G22300.1 )
(BLAST)

001: MSMQQETSHM TAAPQTNGHQ IFPEIDMSAG DSSSIVRATV VQASTVFYDT PATLDKAERL LSEAAENGSQ LVVFPEAFIG GYPRGSTFEL AIGSRTAKGR
101: DDFRKYHASA IDVPGPEVER LALMAKKYKV YLVMGVIERE GYTLYCTVLF FDSQGLFLGK HRKLMPTALE RCIWGFGDGS TIPVFDTPIG KIGAAICWEN
201: RMPSLRTAMY AKGIEIYCAP TADSRETWLA SMTHIALEGG CFVLSANQFC RRKDYPSPPE YMFSGSEESL TPDSVVCAGG SSIISPLGIV LAGPNYRGEA
301: LITADLDLGD IARAKFDFDV VGHYSRPEVF SLNIREHPRK AVSFKTSKVM EDESV

Arabidopsis Description

NIT4Bifunctional nitrilase/nitrile hydratase NIT4 [Source:UniProtKB/Swiss-Prot;Acc:P46011]
SUBAcon: [peroxisome,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.