Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 2
- plasma membrane 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_04s0044g01710.t01 | Wine grape | plastid | 49.22 | 53.64 |
| HORVU7Hr1G093640.3 | Barley | cytosol | 27.02 | 49.86 |
| Os06t0622000-01 | Rice | cytosol | 58.85 | 47.85 |
| KRH76501 | Soybean | cytosol | 50.78 | 47.6 |
| TraesCS7D01G393200.1 | Wheat | cytosol | 55.28 | 46.84 |
| TraesCS7B01G299600.1 | Wheat | cytosol | 55.12 | 46.71 |
| TraesCS7A01G399000.1 | Wheat | cytosol | 54.97 | 46.64 |
| KXG20380 | Sorghum | cytosol | 56.52 | 46.13 |
| Solyc02g082290.2.1 | Tomato | cytosol | 48.91 | 45.92 |
| Zm00001d046722_P007 | Maize | cytosol | 56.37 | 43.32 |
| HORVU1Hr1G080470.5 | Barley | cytosol | 51.24 | 42.8 |
| GSMUA_Achr4P18410_001 | Banana | extracellular | 7.61 | 26.92 |
| GSMUA_Achr4P18400_001 | Banana | cytosol | 7.3 | 22.82 |
| GSMUA_Achr9P25210_001 | Banana | cytosol | 17.39 | 21.41 |
| GSMUA_Achr4P13250_001 | Banana | cytosol | 18.32 | 19.06 |
| GSMUA_Achr11P... | Banana | nucleus | 17.24 | 13.42 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P16580_001 | EnsemblPlants:GSMUA_Achr1T16580_001 | EnsemblPlantsGene:GSMUA_Achr1G16580_001 | Gene3D:3.30.40.100 | Gene3D:3.30.565.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0008270 | InterPro:HATPase_C | InterPro:HATPase_C_sf | InterPro:IPR011124 | InterPro:IPR036890 |
| InterPro:Znf_CW | PANTHER:PTHR23336 | PANTHER:PTHR23336:SF11 | PFAM:PF07496 | PFAM:PF13589 | PFscan:PS51050 |
| SUPFAM:SSF55874 | UniParc:UPI000296953E | UniProt:M0S0G6 | MapMan:12.5.1.2 | : | : |
Description
CW-type Zinc Finger, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G16580_001]
Coordinates
chr1:-:12356637..12363477
Molecular Weight (calculated)
73822.0 Da
IEP (calculated)
7.248
GRAVY (calculated)
-0.481
Length
644 amino acids
Sequence
(BLAST)
(BLAST)
001: MPRCRLYPEP EDSHQSREWK TFLQFLWKNE KVSFLSFGMK IMLFCKSTYV SYYDWPESTH AVVPYQMRIS RPAFPKMPSS PAKRVVHSEE FSDHLGEEIA
101: DNACSSVNAI NTLHQEKSSF HMSDDTHIAK LQRVSVEHAF TNSPMPKVQD NALAKNFVRT DPSYLRTLSQ THAGWIFGAI AELVDNSRDA KASRLDIFVE
201: YLYFKKSGDK IPVLSIVDDG HGMSHTEIMR MLSFGHKQPE EDPDQIGRFG IGFKTGSMKL GRDVLVLTQT SSSRSVALLS QCYNENKEIL EIPIITYSKQ
301: GRYMEVDLCI QSEECAASNL NAVKEFSPFN EYFIGEKFGP FGETGTGTQI YIWNLDEWGS NYILEWDNAN SSGNTQQSRG DILIRSRRVR SRPGQISQKV
401: PLDYSLQAYL EVIFFNPRMK IYVQGSLVKS QPLAKCLNKT VQVLGQIMDR EVLLTLGRSK VEWERMNCGM FLYWHGRLIE AYKRVGGQVH NADMGRGVIG
501: VIDVTNLMDG GNGGALVLNN KQGFQDSEVY AKLEEWLGVK ADEYWDKNFD ILDVRKVDER YKPDHDWVQC NKCRKWRILS TDFDCESLPP EWFVFCYMPP
601: FNGKCEIPEQ QVSRGVITIA AKRSHHEVKQ NVKQHEGETP KVKK
101: DNACSSVNAI NTLHQEKSSF HMSDDTHIAK LQRVSVEHAF TNSPMPKVQD NALAKNFVRT DPSYLRTLSQ THAGWIFGAI AELVDNSRDA KASRLDIFVE
201: YLYFKKSGDK IPVLSIVDDG HGMSHTEIMR MLSFGHKQPE EDPDQIGRFG IGFKTGSMKL GRDVLVLTQT SSSRSVALLS QCYNENKEIL EIPIITYSKQ
301: GRYMEVDLCI QSEECAASNL NAVKEFSPFN EYFIGEKFGP FGETGTGTQI YIWNLDEWGS NYILEWDNAN SSGNTQQSRG DILIRSRRVR SRPGQISQKV
401: PLDYSLQAYL EVIFFNPRMK IYVQGSLVKS QPLAKCLNKT VQVLGQIMDR EVLLTLGRSK VEWERMNCGM FLYWHGRLIE AYKRVGGQVH NADMGRGVIG
501: VIDVTNLMDG GNGGALVLNN KQGFQDSEVY AKLEEWLGVK ADEYWDKNFD ILDVRKVDER YKPDHDWVQC NKCRKWRILS TDFDCESLPP EWFVFCYMPP
601: FNGKCEIPEQ QVSRGVITIA AKRSHHEVKQ NVKQHEGETP KVKK
001: MSHDRSVNVS HDAVIAKPER GTMLQSFSPR SHGSKGYSLP QDSEENRGSV GQSAGQSSTS VVDQVRSPAD DAGVTSSSTI CPAPVCRQFW KAGSYNDELS
101: SKSQQPNGKN YLHVHPMFLH SNATSHKWAF GAVAELLDNA VDEIQNGATF VIVDKTTNPR DGATALLIQD DGGGMDPQAM RHCMGFGFSD KKSDSAIGRY
201: GNGFKTSTMR LGADVIVFSR HSKNQTLTQS IGLLSYTYLT RTGHDRIVVP ILDYEFNASA GEFKTLQDRE HFISSLSILL EWSPFSTEAE LLQQFDDVGP
301: HGTKVIIYNM WLNSDAKLEL DFDSVAEDIL IEGSIKKTGS KIVNDHIASR FSYSLRVYLS ILYLRIPETF KIILRGKVVE HHNVADDLMH PQYILYKPQA
401: AGSEEALVVT TIGFLKEAPK VNLHGFCVYH KNRLIMPFWQ VINYSSSRGR GVVGVLEANF VEPTHNKQDF EKTVLLQKLE NRLKEMTVEY WSCHCVLIGY
501: QVNKKPRLQI PQKVQPAGRQ ALSPPPGFQA VFPQGNTTSL PRVSTQPVLL EKRKEHPDSV ASAALKRKVG NDDFTVPGHI RVEQFIHGSA SQSQDIETVK
601: LMEENKKLRA KCLDRKVRSQ NLEVKAMNLR SELENYKSEY ERLMVELQAL DLVKDEHRRN VNT
101: SKSQQPNGKN YLHVHPMFLH SNATSHKWAF GAVAELLDNA VDEIQNGATF VIVDKTTNPR DGATALLIQD DGGGMDPQAM RHCMGFGFSD KKSDSAIGRY
201: GNGFKTSTMR LGADVIVFSR HSKNQTLTQS IGLLSYTYLT RTGHDRIVVP ILDYEFNASA GEFKTLQDRE HFISSLSILL EWSPFSTEAE LLQQFDDVGP
301: HGTKVIIYNM WLNSDAKLEL DFDSVAEDIL IEGSIKKTGS KIVNDHIASR FSYSLRVYLS ILYLRIPETF KIILRGKVVE HHNVADDLMH PQYILYKPQA
401: AGSEEALVVT TIGFLKEAPK VNLHGFCVYH KNRLIMPFWQ VINYSSSRGR GVVGVLEANF VEPTHNKQDF EKTVLLQKLE NRLKEMTVEY WSCHCVLIGY
501: QVNKKPRLQI PQKVQPAGRQ ALSPPPGFQA VFPQGNTTSL PRVSTQPVLL EKRKEHPDSV ASAALKRKVG NDDFTVPGHI RVEQFIHGSA SQSQDIETVK
601: LMEENKKLRA KCLDRKVRSQ NLEVKAMNLR SELENYKSEY ERLMVELQAL DLVKDEHRRN VNT
Arabidopsis Description
MORC6Protein MICRORCHIDIA 6 [Source:UniProtKB/Swiss-Prot;Acc:Q56Y74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.