Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytoskeleton, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 1
- plastid 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytoskeleton 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P19880_001 | Banana | cytosol | 15.03 | 6.05 |
| KXG38569 | Sorghum | cytosol | 1.96 | 5.36 |
| GSMUA_Achr10P... | Banana | cytosol | 13.07 | 5.04 |
| GSMUA_Achr5P03650_001 | Banana | cytosol | 13.07 | 4.45 |
| GSMUA_Achr10P... | Banana | mitochondrion, plasma membrane | 17.65 | 4.29 |
| CDY16679 | Canola | mitochondrion | 5.23 | 4.1 |
| GSMUA_Achr4P17050_001 | Banana | vacuole | 15.69 | 3.93 |
| Os02t0740400-02 | Rice | extracellular | 8.5 | 3.39 |
| CDX68521 | Canola | mitochondrion | 2.61 | 2.76 |
| GSMUA_Achr5P03640_001 | Banana | extracellular | 2.61 | 2.38 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P19890_001 | EnsemblPlants:GSMUA_Achr7T19890_001 | EnsemblPlantsGene:GSMUA_Achr7G19890_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR23073 | PANTHER:PTHR23073:SF29 | TMHMM:TMhelix | UniParc:UPI0002960674 | UniProt:M0TJ26 | MapMan:35.2 |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G19890_001]
Coordinates
chr7:-:22910955..22913617
Molecular Weight (calculated)
17012.6 Da
IEP (calculated)
6.513
GRAVY (calculated)
0.139
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLMGAFGAG AVQISYADAS EEDYNPHAVE DSWSGSGGAD KIVRQVKQRL EELLRTKGMQ RGSYPAFTVS AKGNKVTIKF IVPPACEISH LIVNIVKHLG
101: EMAEHYGGGS EMLLRAWDRF AEAIIRVSYI VSFILILQFF PVGFEEYIFK SCI
101: EMAEHYGGGS EMLLRAWDRF AEAIIRVSYI VSFILILQFF PVGFEEYIFK SCI
1: MEGLIPYLIH AIKKDHKPDH QRYRSISVGS SRSYRPLMMG QDGSSSMQGS SHRRTRSDYN PHVIMDKFDQ RSSGFGQEFV NKDSSSQKIA TKT
Arabidopsis Description
Beta-1,4-xylosidase [Source:UniProtKB/TrEMBL;Acc:A8MR54]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.