CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16967	Canola	cytosol	12.82	6.46
CDY16678	Canola	cytosol	3.59	6.14
CDY23468	Canola	cytosol	11.79	6.02
CDY29229	Canola	mitochondrion	10.77	5.72
GSMUA_Achr7P19890_001	Banana	cytoskeleton, cytosol, peroxisome	4.1	5.23
CDX85480	Canola	plastid	15.38	4.84
CDY38078	Canola	plastid	15.38	4.82
CDX69409	Canola	plastid	15.38	4.69
CDY43155	Canola	plastid	13.85	4.66
CDX68520	Canola	cytosol	3.59	4.55
CDY28733	Canola	plastid	14.36	4.46
CDY30315	Canola	plastid	14.87	4.38
CDY36475	Canola	plastid	13.85	4.29
CDY49920	Canola	plastid	13.85	4.23
CDX69234	Canola	cytosol, plastid	12.31	4.01
CDY51218	Canola	plastid	14.36	3.91
CDY64607	Canola	plastid	11.79	3.85
Os02t0740400-02	Rice	extracellular	7.18	3.66
CDX96098	Canola	mitochondrion	4.1	3.36
CDY71527	Canola	mitochondrion	4.1	3.04
CDX68521	Canola	mitochondrion	2.05	2.76
CDX94544	Canola	mitochondrion	8.21	2.63
CDX83073	Canola	endoplasmic reticulum	4.1	2.11
CDY16968	Canola	cytosol, extracellular, plastid	1.03	0.85
CDY23469	Canola	plastid	0.51	0.58
KXG38569	Sorghum	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY16679	EnsemblPlantsGene:GSBRNA2T00094528001	PANTHER:PTHR23073	PANTHER:PTHR23073:SF29	ProteinID:CDY16679	ProteinID:CDY16679.1
SEG:seg	UniParc:UPI0004EE077F	UniProt:A0A078FUI8	MapMan:35.2	:	:

Description

BnaA09g20570DBnaA09g20570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FUI8]

Coordinates

chrLK032066:-:490294..491333

Molecular Weight (calculated)

21408.5 Da

IEP (calculated)

10.642

GRAVY (calculated)

-0.498

Length

195 amino acids

Sequence
(BLAST)

001: MALLHRLFRA ARVWRGSLSH HPPSQPRGRR ELRRRFHHGT VEQSNSKASD VLRSCSTLNE SPCFSMAPAV FGALFSLGAI GVAYAHSDEA NYKSSSPIDP
101: PPNHSSLPAD PPPNYADIAK KERARIQELI QSKGSQYGSL PRFNVSVRGQ KITLKFQVPS TCEVAQLIAN IGSQLGAKVS DRTGGSDMML RSWDK

Best Arabidopsis Sequence Match ( AT4G04180.1 )
(BLAST)

001: MAILDKLFRA SRAWRGSLSH SKSMVPSQSP RARELRRCFH HGNFEQSNSK VNQVLRSCST LNDSPYFSMA PAVLGALFSV GVIGVAYAES DEANNDKSSA
101: PIDPNDETSS APIDPPPNYV DIAKKERARV EELIQSKGTQ YGSYPRFNVA VRGQKITLKF QVPSTCEVAQ LISNIGSQLG VKVSDRTGGS DMLLRAWDNP
201: VAWQITLRSV ENKKKLGESE DDSDDDLCIL IFGSLLTSDK VEVEFIKKGS LTTEELEAFV SALGVAGTKA GQNKGSGSRG STRDSSTDKS ISQLESMGVR
301: IYGVNKPLGD DSMDEISWDN IAGYDQQKRE IEDTILMALH SPEVYDDIVR GTRSKFESNR PRAVLFEGPP GTGKTSCARV IANQAGIPLL YVPLEAVMSK
401: YYGESERLLG AVFSQANELP DGAIIFLDEI DAFAISRDSE MHEATRRVLS VLLRQIDGFE QEKKVVVIAA TNRKQDLDPA LISRFDSMIM FDLPDLQTRQ
501: EIIAQYAKQL SKPELVQLAQ ATEAMSGRDI RDVCQGAERT WASKLIRRAK AGGEEQKITL PPIQEYLESA EARRKSLRSV TEQKEQKFAA RSKKPLLDFE

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G04180]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.