CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024472.1-P	Field mustard	plastid	72.75	64.18
PGSC0003DMT400008178	Potato	cytosol, mitochondrion, peroxisome	13.35	42.61
CDY36475	Canola	plastid	72.21	42.06
CDY23468	Canola	cytosol	40.05	38.48
CDY30315	Canola	plastid	68.12	37.76
CDY64607	Canola	plastid	60.76	37.35
CDY16967	Canola	cytosol	39.24	37.21
CDX69234	Canola	cytosol, plastid	60.49	37.12
CDY51218	Canola	plastid	67.3	34.45
Zm00001d051572_P001	Maize	mitochondrion	52.86	32.07
EES07394	Sorghum	mitochondrion	51.77	31.41
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane	53.41	31.16
TraesCS6A01G273800.1	Wheat	mitochondrion	51.23	30.87
CDY43155	Canola	plastid	48.77	30.86
TraesCS6D01G253600.1	Wheat	mitochondrion	51.23	30.82
Zm00001d017783_P002	Maize	mitochondrion	51.77	30.69
TraesCS6B01G300900.1	Wheat	mitochondrion	50.95	30.66
Os02t0706500-01	Rice	mitochondrion	49.59	29.55
CDX85480	Canola	plastid	48.77	28.87
CDY49920	Canola	plastid	49.86	28.64
HORVU6Hr1G069110.2	Barley	plastid	49.59	28.39
CDY28733	Canola	plastid	48.5	28.34
CDY38078	Canola	plastid	47.96	28.25
CDX69409	Canola	plastid	49.05	28.12
CDX96098	Canola	mitochondrion	17.44	26.89
CDY16678	Canola	cytosol	5.72	18.42
CDX68520	Canola	cytosol	6.54	15.58
CDY16679	Canola	mitochondrion	5.72	10.77
CDX83073	Canola	endoplasmic reticulum	8.72	8.42
CDX94544	Canola	mitochondrion	13.9	8.37
CDY16968	Canola	cytosol, extracellular, plastid	4.09	6.38
CDY23469	Canola	plastid	3.0	6.36
CDY71527	Canola	mitochondrion	4.09	5.7
CDX68521	Canola	mitochondrion	1.36	3.45

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.2	GO:A0A078GVP8	UniProt:A0A078GVP8	InterPro:ATPase_AAA_core
EnsemblPlants:CDY29229	ProteinID:CDY29229	ProteinID:CDY29229.1	ncoils:Coil	InterPro:DUF3523	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
EnsemblPlantsGene:GSBRNA2T00042156001	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF12037	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3
SUPFAM:SSF52540	UniParc:UPI0004EE0FDF	SEG:seg	:	:	:

Description

BnaA06g25280DBnaA06g25280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVP8]

Coordinates

chrLK032233:+:399469..401013

Molecular Weight (calculated)

42122.9 Da

IEP (calculated)

9.972

GRAVY (calculated)

-0.597

Length

367 amino acids

Sequence
(BLAST)

001: MISKGRGNWL RIRGIYCSSR HKQKLKTFVM KMSWQENDCR RIMKLRDGIT LSWLRCKRSL LSGKSKQGSP RKNRFKHSET EKERAELERE TIRLKAMAEA
101: EGRAHEAKLT EEQNQRMLLD KINGEMEKWL AAINTTFGHI EGGVKVLLTY RNKLTGGDVA PLDYLAFVKR IVTSMVSSEL CLMVYQILDR RRNSTYMSEA
201: QRSALNALLF RTGDQSRDIV LILATNRPGD LDSAVTDMID EVIEFPLPGE DERFKLLKLY LNKYLTGEDQ KGDKDTKTKW SHLFKKQSQK ITVEGDLTDQ
301: VIREAAKKTE GFSGREITKL VAGVQAAVYG RPDCVLDARL FEEIVDYKIQ EHHQRARLAT EGGQSFP

Best Arabidopsis Sequence Match ( AT2G18330.1 )
(BLAST)

001: MAASRLCSAA AIAAAFTSMS MSQNRAYADS RFRFPFFSSS PPAEESPTDH KSSSNSKSET KPDSDEPKGS GFDPESLERG AKALREINSS PHSKQVFDLM
101: RKQEKTRLAE LAAEKEHNEA IQASKDIERQ RKLAEDQRNL VQQQAQAKAQ NLRYEDELAR KRMQTDNEAQ RRHNAELVSM QEASSIRKEK ARIATEEQIQ
201: AQQRETEKER AELERETIRV KAMAEAEGRA HEAKLTEEQN RRMLLDKING EREKWLAAIN TTFSHIEGGV RTLLTDRSKL IMTVGGVTAL AAGVYTTREG
301: ARVTWGYINR ILGQPSLIRE SSMGRFPWAG SVSQFKNKLS TAAGAAASAE GEKPLENVIL HRSLKTRIER LARATANTKS HKAPFRNMMF YGPPGTGKTM
401: VAREIARKSG LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR SALNALLFRT GDQSRDIVLV LATNRPGDLD
501: SAVTDRIDEV IEFPLPGEEE RFKLLKLYLN KYLMGDDKKG EKDSNLKWSN LFKKKKSQKI TIEGDLTDQV IKEAAKKTEG FSGREIAKLV AGVQAAVYGR
601: QDCVLDSQLF EEIVDYKIEE HHQRIRLATE GGQSFP

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.