CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY64607	Canola	plastid	96.82	96.98
AT4G36580.1	Thale cress	plastid	86.96	82.28
CDY36475	Canola	plastid	80.94	76.83
PGSC0003DMT400040085	Potato	extracellular	45.15	75.84
CDY30315	Canola	plastid	79.26	71.6
VIT_04s0023g01900.t01	Wine grape	plastid	74.25	70.81
CDY23468	Canola	cytosol	44.98	70.42
Solyc02g062700.2.1	Tomato	nucleus	73.08	68.28
KRH28685	Soybean	nucleus	71.57	67.83
KRH76781	Soybean	nucleus	70.9	67.73
CDY16967	Canola	cytosol	43.81	67.7
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane	69.4	65.98
CDY51218	Canola	plastid	79.1	65.97
Zm00001d051572_P001	Maize	mitochondrion	64.21	63.47
EES07394	Sorghum	mitochondrion	63.55	62.81
CDY43155	Canola	plastid	59.87	61.72
Os02t0706500-01	Rice	mitochondrion	63.38	61.53
Zm00001d017783_P002	Maize	mitochondrion	63.55	61.39
TraesCS6D01G253600.1	Wheat	mitochondrion	62.21	60.98
TraesCS6A01G273800.1	Wheat	mitochondrion	61.71	60.59
CDY29229	Canola	mitochondrion	37.12	60.49
TraesCS6B01G300900.1	Wheat	mitochondrion	61.54	60.33
CDY28733	Canola	plastid	62.88	59.87
CDX69409	Canola	plastid	62.54	58.44
CDY49920	Canola	plastid	62.04	58.06
CDX85480	Canola	plastid	59.03	56.94
CDY38078	Canola	plastid	58.53	56.18
CDX96098	Canola	mitochondrion	21.91	55.04
HORVU6Hr1G069110.2	Barley	plastid	58.19	54.29
CDY16968	Canola	cytosol, extracellular, plastid	13.38	34.04
CDY23469	Canola	plastid	9.36	32.37
CDX68520	Canola	cytosol	5.35	20.78
CDX94544	Canola	mitochondrion	16.89	16.58
CDY16678	Canola	cytosol	3.01	15.79
CDX83073	Canola	endoplasmic reticulum	8.86	13.95
CDY71527	Canola	mitochondrion	5.69	12.93
CDY16679	Canola	mitochondrion	4.01	12.31
CDX68521	Canola	mitochondrion	2.17	8.97

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.2	GO:A0A078BZ47	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
EnsemblPlants:CDX69234	ProteinID:CDX69234	ProteinID:CDX69234.1	ncoils:Coil	InterPro:DUF3523	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	EnsemblPlantsGene:GSBRNA2T00131040001	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF12037	ScanProsite:PS00674	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3	SMART:SM00382	SUPFAM:SSF52540
UniParc:UPI0004EDFF3D	SEG:seg	:	:	:	:

Description

BnaC01g02190D

Coordinates

chrLK031789:+:3618790..3621538

Molecular Weight (calculated)

67506.3 Da

IEP (calculated)

9.809

GRAVY (calculated)

-0.681

Length

598 amino acids

Sequence
(BLAST)

001: MSRWFPFFSS PPSDSPANQS SSESKPERDE PKGSGFDPEA LERAAKALRE INSSPHSKQV FDLMRKQEKT RLAESAADKS RNDAIRAHSD IERQQRLAEA
101: QRSLLQTEAL TKAQTLRYED ELARKRQQTD HEAQRHHNVE LVRMQEESSM RKERSRISTE EQIQAQQRQT EKERAELERE TIRVKAMAEA EGRAHEAKLT
201: EDQNRRLLME RINGEREKWL AAINTMFGHI EGGFRTLVTD RNKLIVAVGG ATALAAGVYT TREGARVTWG YINRMLGQPS LIRESSMGRF PLAGTMSQLK
301: NRISGAAALS AAKGSKPLDN VILHPSLKKR IEHLARATSN TKSHQAPFRN MMFYGPPGTG KTMVAREIAR KSGLDYAMMT GGDVAPLGSQ AVTKIHQIFD
401: WAKTSNKGLL LFIDEADAFL CERNSVYMSE AQRSALNALL FRTGDQSRDI VLVLATNRPG DLDSAVTDRI DEVIEFPLPG EEERFKLLNL YLNNYLKKNE
501: ENRDTKPKWS HLFKKLSQKI RVEDDLTDKV ISEAARKTEG FSGREIAKLV AGVQAGVYGR KGCVLDSQLF KEIVEYKVEE HHQRIRLASE GCQPLLFS

Best Arabidopsis Sequence Match ( AT4G36580.1 )
(BLAST)

001: MAASRLCSAA AIAAAFTSMS MSQNRAYADS SRFRFPFFSS SPSPPPSDSP ANQSSSKSKA EPDEPKGSGF DPEALERAAK ALRDINSSPH SKQVFDLMRK
101: QEKTRLAELT AETSHYEAIQ AHNDIGRQQK LAEDQRNLLQ TQAQTKAQNL RYEDELARKR QQTDHEAQRH HNVELVKMQE ASSIRKEKAK IATEEQIQAQ
201: HRQTEKERAE LERETIRVKA MAEAEGRAHE AKLTEEQNRR LLMERINGER EKWLAAINTM FSHIEGGFRT LLTDRNKLIM TVGGATALAA GVYTTREGAR
301: VTWGYINRML GQPSLIRESS MRRFPWTGSV SQFKNRISGA AAASAAEGKK PLDNVILHTS LKKRIERLAR ATANTKSHQA PFRNMMFYGP PGTGKTMVAR
401: EIARKSGLDY AMMTGGDVAP LGSQAVTKIH QIFDWAKKSN KGLLLFIDEA DAFLCERNST YMSEAQRSAL NALLFRTGDQ SRDIVLVLAT NRRGDLDSAV
501: TDRIDEVIEF PLPGEEERFK LLNLYLNKYL KMGDNNEDTK PKWSHLFKKL SQKITVEEDL TDKVISEAAK KTEGFSGREI AKLVAGVQAG VYGRADCVLD
601: SQLFKEIVEY KVEEHHRRHM LASEGFQPLL FS

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:F4JQE9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.