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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • plastid 7
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
  • nucleus 1
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, nucleus, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:secretory
MultiLoc:plastid
Plant-mPloc:nucleus
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:cytosol
plastid: 22908117
nucleus: 25464976
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
msms PMID: 25464976 doi
Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400040085 Potato extracellular 54.38 97.75
VIT_04s0023g01900.t01 Wine grape plastid 78.44 80.06
CDY36475 Canola plastid 76.09 77.3
AT2G18330.1 Thale cress plastid 75.94 76.42
KRH76781 Soybean nucleus 73.59 75.24
KRH28685 Soybean nucleus 74.06 75.12
AT4G36580.1 Thale cress plastid 73.44 74.37
CDY30315 Canola plastid 76.41 73.87
Bra011692.1-P Field mustard plastid 68.91 73.62
CDX69234 Canola cytosol, plastid 68.28 73.08
CDY64607 Canola plastid 68.12 73.03
GSMUA_Achr10P... Banana mitochondrion, plasma membrane 69.22 70.43
Zm00001d051572_P001 Maize mitochondrion 64.22 67.93
Bra037225.1-P Field mustard plastid 75.94 67.31
CDY51218 Canola plastid 75.31 67.22
EES07394 Sorghum mitochondrion 62.81 66.45
Os02t0706500-01 Rice mitochondrion 62.97 65.42
TraesCS6D01G253600.1 Wheat mitochondrion 62.34 65.41
TraesCS6A01G273800.1 Wheat mitochondrion 62.03 65.19
TraesCS6B01G300900.1 Wheat mitochondrion 61.88 64.92
Zm00001d017783_P002 Maize mitochondrion 61.88 63.97
Solyc03g097020.2.1 Tomato nucleus 62.97 63.77
HORVU6Hr1G069110.2 Barley plastid 57.81 57.72
Solyc02g036330.2.1 Tomato cytosol 7.81 24.75
Solyc02g036340.2.1 Tomato nucleus 6.09 10.34
Protein Annotations
Gene3D:3.40.50.300MapMan:35.1InterPro:AAA+_ATPaseInterPro:ATPase_AAA_CSInterPro:ATPase_AAA_corencoils:Coil
InterPro:DUF3523GO:GO:0000166GO:GO:0003674GO:GO:0005488GO:GO:0005524GO:GO:0005575
GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0005739GO:GO:0007005GO:GO:0008150
GO:GO:0009987GO:GO:0016043UniProt:K4B6F8InterPro:P-loop_NTPasePFAM:PF00004PFAM:PF12037
ScanProsite:PS00674PANTHER:PTHR23075PANTHER:PTHR23075:SF3SMART:SM00382SUPFAM:SSF52540EnsemblPlantsGene:Solyc02g062700.2
EnsemblPlants:Solyc02g062700.2.1UniParc:UPI0002768289SEG:seg:::
Description
No Description!
Coordinates
chr2:+:34428918..34436392
Molecular Weight (calculated)
71354.2 Da
IEP (calculated)
8.542
GRAVY (calculated)
-0.618
Length
640 amino acids
Sequence
(BLAST)
001: MAASKLSSMA AMAAAAAIAA TSSTIPNRAY ADSPFRFNPF SSPSPSVPSS SSESPQADSS ESDAKDSSED SRGGFNPESL ERGAKALREI NSSPYHKQVY
101: DVMRKQEKTR LADIAAEKVH FEAIQAHADI DKQRQWGEDQ RNLYQQQSQA KAQMLRYEDE LARKRMQTDH EAQRRHNAEL VKMQEESSLR KEQARRATED
201: QIQAQQRQTE KERAEIERET VRVKAMAEAE GRAHEAKLTE DHKRRMLMER INGEREKWLA AINTTFSHVE EGFRILLTDR SKLVMTVGGV TALAAGVYTT
301: REGARVTWGY INRILGQPSL IRESSMSRFP WSGMISQVAN KGLKFGTAAG LSATGQSSSA FGNIILHPSL QRRIEHLARA TANTKSHQAP FRNMLFYGPP
401: GTGKTMVARE IARKSGLDYA MMTGGDVAPL GAQAVTKIHE IFDWAKKSKK GLLLFIDEAD AFLCERNSTY MSEAQRSALN ALLFRTGDQS RDVVLVLATN
501: RPGDLDSAVT DRIDEVIEFP LPQEDERFQL LKLYLNKYLA GEGDSDSDSK WGHLFKKSPQ RITIKDLSDE VIREAAKKTE GFSGREIAKL VASVQATVYG
601: SPDCVLDSQL FREIVDYKVA EHHQRIKLAA EGAEPTYQGN
Best Arabidopsis Sequence Match ( AT2G18330.1 )
(BLAST)
001: MAASRLCSAA AIAAAFTSMS MSQNRAYADS RFRFPFFSSS PPAEESPTDH KSSSNSKSET KPDSDEPKGS GFDPESLERG AKALREINSS PHSKQVFDLM
101: RKQEKTRLAE LAAEKEHNEA IQASKDIERQ RKLAEDQRNL VQQQAQAKAQ NLRYEDELAR KRMQTDNEAQ RRHNAELVSM QEASSIRKEK ARIATEEQIQ
201: AQQRETEKER AELERETIRV KAMAEAEGRA HEAKLTEEQN RRMLLDKING EREKWLAAIN TTFSHIEGGV RTLLTDRSKL IMTVGGVTAL AAGVYTTREG
301: ARVTWGYINR ILGQPSLIRE SSMGRFPWAG SVSQFKNKLS TAAGAAASAE GEKPLENVIL HRSLKTRIER LARATANTKS HKAPFRNMMF YGPPGTGKTM
401: VAREIARKSG LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR SALNALLFRT GDQSRDIVLV LATNRPGDLD
501: SAVTDRIDEV IEFPLPGEEE RFKLLKLYLN KYLMGDDKKG EKDSNLKWSN LFKKKKSQKI TIEGDLTDQV IKEAAKKTEG FSGREIAKLV AGVQAAVYGR
601: QDCVLDSQLF EEIVDYKIEE HHQRIRLATE GGQSFP
Arabidopsis Description
AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.