Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 7
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 1
- cytosol 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
plastid:
22908117
nucleus: 25464976 nucleus: 28394025 |
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400040085 | Potato | extracellular | 54.38 | 97.75 |
VIT_04s0023g01900.t01 | Wine grape | plastid | 78.44 | 80.06 |
CDY36475 | Canola | plastid | 76.09 | 77.3 |
AT2G18330.1 | Thale cress | plastid | 75.94 | 76.42 |
KRH76781 | Soybean | nucleus | 73.59 | 75.24 |
KRH28685 | Soybean | nucleus | 74.06 | 75.12 |
AT4G36580.1 | Thale cress | plastid | 73.44 | 74.37 |
CDY30315 | Canola | plastid | 76.41 | 73.87 |
Bra011692.1-P | Field mustard | plastid | 68.91 | 73.62 |
CDX69234 | Canola | cytosol, plastid | 68.28 | 73.08 |
CDY64607 | Canola | plastid | 68.12 | 73.03 |
GSMUA_Achr10P... | Banana | mitochondrion, plasma membrane | 69.22 | 70.43 |
Zm00001d051572_P001 | Maize | mitochondrion | 64.22 | 67.93 |
Bra037225.1-P | Field mustard | plastid | 75.94 | 67.31 |
CDY51218 | Canola | plastid | 75.31 | 67.22 |
EES07394 | Sorghum | mitochondrion | 62.81 | 66.45 |
Os02t0706500-01 | Rice | mitochondrion | 62.97 | 65.42 |
TraesCS6D01G253600.1 | Wheat | mitochondrion | 62.34 | 65.41 |
TraesCS6A01G273800.1 | Wheat | mitochondrion | 62.03 | 65.19 |
TraesCS6B01G300900.1 | Wheat | mitochondrion | 61.88 | 64.92 |
Zm00001d017783_P002 | Maize | mitochondrion | 61.88 | 63.97 |
Solyc03g097020.2.1 | Tomato | nucleus | 62.97 | 63.77 |
HORVU6Hr1G069110.2 | Barley | plastid | 57.81 | 57.72 |
Solyc02g036330.2.1 | Tomato | cytosol | 7.81 | 24.75 |
Solyc02g036340.2.1 | Tomato | nucleus | 6.09 | 10.34 |
Protein Annotations
Gene3D:3.40.50.300 | MapMan:35.1 | InterPro:AAA+_ATPase | InterPro:ATPase_AAA_CS | InterPro:ATPase_AAA_core | ncoils:Coil |
InterPro:DUF3523 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0007005 | GO:GO:0008150 |
GO:GO:0009987 | GO:GO:0016043 | UniProt:K4B6F8 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF12037 |
ScanProsite:PS00674 | PANTHER:PTHR23075 | PANTHER:PTHR23075:SF3 | SMART:SM00382 | SUPFAM:SSF52540 | EnsemblPlantsGene:Solyc02g062700.2 |
EnsemblPlants:Solyc02g062700.2.1 | UniParc:UPI0002768289 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2:+:34428918..34436392
Molecular Weight (calculated)
71354.2 Da
IEP (calculated)
8.542
GRAVY (calculated)
-0.618
Length
640 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASKLSSMA AMAAAAAIAA TSSTIPNRAY ADSPFRFNPF SSPSPSVPSS SSESPQADSS ESDAKDSSED SRGGFNPESL ERGAKALREI NSSPYHKQVY
101: DVMRKQEKTR LADIAAEKVH FEAIQAHADI DKQRQWGEDQ RNLYQQQSQA KAQMLRYEDE LARKRMQTDH EAQRRHNAEL VKMQEESSLR KEQARRATED
201: QIQAQQRQTE KERAEIERET VRVKAMAEAE GRAHEAKLTE DHKRRMLMER INGEREKWLA AINTTFSHVE EGFRILLTDR SKLVMTVGGV TALAAGVYTT
301: REGARVTWGY INRILGQPSL IRESSMSRFP WSGMISQVAN KGLKFGTAAG LSATGQSSSA FGNIILHPSL QRRIEHLARA TANTKSHQAP FRNMLFYGPP
401: GTGKTMVARE IARKSGLDYA MMTGGDVAPL GAQAVTKIHE IFDWAKKSKK GLLLFIDEAD AFLCERNSTY MSEAQRSALN ALLFRTGDQS RDVVLVLATN
501: RPGDLDSAVT DRIDEVIEFP LPQEDERFQL LKLYLNKYLA GEGDSDSDSK WGHLFKKSPQ RITIKDLSDE VIREAAKKTE GFSGREIAKL VASVQATVYG
601: SPDCVLDSQL FREIVDYKVA EHHQRIKLAA EGAEPTYQGN
101: DVMRKQEKTR LADIAAEKVH FEAIQAHADI DKQRQWGEDQ RNLYQQQSQA KAQMLRYEDE LARKRMQTDH EAQRRHNAEL VKMQEESSLR KEQARRATED
201: QIQAQQRQTE KERAEIERET VRVKAMAEAE GRAHEAKLTE DHKRRMLMER INGEREKWLA AINTTFSHVE EGFRILLTDR SKLVMTVGGV TALAAGVYTT
301: REGARVTWGY INRILGQPSL IRESSMSRFP WSGMISQVAN KGLKFGTAAG LSATGQSSSA FGNIILHPSL QRRIEHLARA TANTKSHQAP FRNMLFYGPP
401: GTGKTMVARE IARKSGLDYA MMTGGDVAPL GAQAVTKIHE IFDWAKKSKK GLLLFIDEAD AFLCERNSTY MSEAQRSALN ALLFRTGDQS RDVVLVLATN
501: RPGDLDSAVT DRIDEVIEFP LPQEDERFQL LKLYLNKYLA GEGDSDSDSK WGHLFKKSPQ RITIKDLSDE VIREAAKKTE GFSGREIAKL VASVQATVYG
601: SPDCVLDSQL FREIVDYKVA EHHQRIKLAA EGAEPTYQGN
001: MAASRLCSAA AIAAAFTSMS MSQNRAYADS RFRFPFFSSS PPAEESPTDH KSSSNSKSET KPDSDEPKGS GFDPESLERG AKALREINSS PHSKQVFDLM
101: RKQEKTRLAE LAAEKEHNEA IQASKDIERQ RKLAEDQRNL VQQQAQAKAQ NLRYEDELAR KRMQTDNEAQ RRHNAELVSM QEASSIRKEK ARIATEEQIQ
201: AQQRETEKER AELERETIRV KAMAEAEGRA HEAKLTEEQN RRMLLDKING EREKWLAAIN TTFSHIEGGV RTLLTDRSKL IMTVGGVTAL AAGVYTTREG
301: ARVTWGYINR ILGQPSLIRE SSMGRFPWAG SVSQFKNKLS TAAGAAASAE GEKPLENVIL HRSLKTRIER LARATANTKS HKAPFRNMMF YGPPGTGKTM
401: VAREIARKSG LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR SALNALLFRT GDQSRDIVLV LATNRPGDLD
501: SAVTDRIDEV IEFPLPGEEE RFKLLKLYLN KYLMGDDKKG EKDSNLKWSN LFKKKKSQKI TIEGDLTDQV IKEAAKKTEG FSGREIAKLV AGVQAAVYGR
601: QDCVLDSQLF EEIVDYKIEE HHQRIRLATE GGQSFP
101: RKQEKTRLAE LAAEKEHNEA IQASKDIERQ RKLAEDQRNL VQQQAQAKAQ NLRYEDELAR KRMQTDNEAQ RRHNAELVSM QEASSIRKEK ARIATEEQIQ
201: AQQRETEKER AELERETIRV KAMAEAEGRA HEAKLTEEQN RRMLLDKING EREKWLAAIN TTFSHIEGGV RTLLTDRSKL IMTVGGVTAL AAGVYTTREG
301: ARVTWGYINR ILGQPSLIRE SSMGRFPWAG SVSQFKNKLS TAAGAAASAE GEKPLENVIL HRSLKTRIER LARATANTKS HKAPFRNMMF YGPPGTGKTM
401: VAREIARKSG LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR SALNALLFRT GDQSRDIVLV LATNRPGDLD
501: SAVTDRIDEV IEFPLPGEEE RFKLLKLYLN KYLMGDDKKG EKDSNLKWSN LFKKKKSQKI TIEGDLTDQV IKEAAKKTEG FSGREIAKLV AGVQAAVYGR
601: QDCVLDSQLF EEIVDYKIEE HHQRIRLATE GGQSFP
Arabidopsis Description
AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.