Factsheet for Solyc03g097020.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 1
cytosol 1
nucleus 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plastid

plastid: 20363867
nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23468	Canola	cytosol	51.9	85.86
VIT_16s0039g02110.t01	Wine grape	plasma membrane	81.49	81.62
CDY16967	Canola	cytosol	49.21	80.36
KRH24032	Soybean	mitochondrion, nucleus	77.85	79.74
KRH29004	Soybean	nucleus	78.16	79.68
Bra032021.1-P	Field mustard	plastid	72.78	79.31
CDY43155	Canola	plastid	72.47	78.97
AT3G03060.1	Thale cress	plastid	77.69	78.18
Bra021376.1-P	Field mustard	plastid	72.94	78.14
CDY28733	Canola	plastid	77.53	78.03
CDX69409	Canola	plastid	77.22	76.25
AT5G16930.1	Thale cress	plastid	77.22	75.78
GSMUA_Achr4P17050_001	Banana	vacuole	73.1	75.61
CDY49920	Canola	plastid	76.42	75.59
Bra008582.1-P	Field mustard	plastid	69.15	74.96
TraesCS6B01G294300.1	Wheat	peroxisome	62.97	74.53
HORVU0Hr1G016640.4	Barley	cytosol, nucleus, peroxisome	60.13	74.51
CDX85480	Canola	plastid	71.68	73.06
Bra023590.1-P	Field mustard	plastid	72.31	72.08
CDY38078	Canola	plastid	70.89	71.91
HORVU0Hr1G032110.1	Barley	cytosol, nucleus	65.66	71.8
PGSC0003DMT400008177	Potato	cytosol	11.71	69.81
Os02t0697600-01	Rice	mitochondrion	69.94	69.06
TraesCS6A01G266900.1	Wheat	peroxisome, plastid	68.83	68.4
TraesCS6D01G247700.1	Wheat	peroxisome, plastid	68.67	68.24
HORVU6Hr1G067630.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	67.88	67.56
Zm00001d017707_P003	Maize	plastid	68.35	67.08
EES07415	Sorghum	plastid	68.35	66.56
Zm00001d051535_P001	Maize	plastid	67.88	65.6
Solyc02g062700.2.1	Tomato	nucleus	63.77	62.97
CDY16968	Canola	cytosol, extracellular, plastid	22.63	60.85
CDY23469	Canola	plastid	15.82	57.8
Solyc02g036330.2.1	Tomato	cytosol	7.75	24.26
Solyc02g036340.2.1	Tomato	nucleus	7.28	12.2

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.2	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	ncoils:Coil	InterPro:DUF3523
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0007005	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	UniProt:K4BJB9	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF12037	PANTHER:PTHR23075
PANTHER:PTHR23075:SF3	SMART:SM00382	SUPFAM:SSF52540	EnsemblPlantsGene:Solyc03g097020.2	EnsemblPlants:Solyc03g097020.2.1	UniParc:UPI0002767FD0
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr3:-:59373389..59379939

Molecular Weight (calculated)

70345.6 Da

IEP (calculated)

9.844

GRAVY (calculated)

-0.612

Length

632 amino acids

Sequence
(BLAST)

001: MGKTYAAGLF AALASAKFGT ETVYADGSFN FSPFSTSSST NTAPSAPANL PKPPQPTAEA PEKPKVRNDN PRTTSAGFDP EALERGAKAL REINNSKSAK
101: QVFDVIKKQE ETRQAELTAK MQEFKALQAQ AETERQRVVY DEQKKLAQQQ AQIKSQMARY EDELARKRMQ AENEHHRARN QELVKMQEES SMRQEAARRA
201: TEEQIQAQRR QTEREKAEIE RETIRVRAMA EAEGRAHEAK LAEDVNRRIL VDRANAEREK WIAAINTTFE HIGGGLRAIL TDQNKLVVAV GGVTALAAGI
301: YTTREGARVV WSYVDRILGQ PSLIRESSRG KYPWSGFFSR AMSTLKGANG GSAKSEKGFG DVILHPSLEK RIQQLANATA NTKSHQAPFR NMLFYGPPGT
401: GKTMVARELA RRSGLDYALM TGGDVAPLGS QAVTKIHQLF DWSKKSKKGL LLFIDEADAF LCERNKTYMS EAQRSALNAL LFRTGDQSKD IVLALATNRP
501: GDLDSAVADR IDEVIEFPLP GEDERFKLIK LYLEKYIAQA GERKPGLFSN LFKKQQQKIE IKGLTDDILR EAAARMEGFS GREVAKMMAG VQAAVYGSEY
601: CVLDANLFRE VVDYKVAEHQ QRRKLAAAEG DK

Best Arabidopsis Sequence Match ( AT5G16930.1 )
(BLAST)

001: MAQKIAIGVI SALAASASLA PSKFAAADGP FTFSGFSTSP SASIPQQQGS TPPASESGKE PSVAGEESDA PPRIRNNNPR TTSAGFDPEA LERGAKALKG
101: INNSAHAKKV FESIKTREET RQAEFTAKAQ EFKAMQSQAE AERQRVIYEE QKKLAQHQAQ TKSQMARYED ELARKRMQAE NEAQRTRNQE LVKMQEESAI
201: RREVARRATE EEIQAQRRQT EREKAEIERE TIRVKAMAEA EGRARESKLS EDVNRRMLVD RANAEREKWV SAINTTFDHI GGGLRTILTD QNKLIVAVGG
301: LTALAAGIYT TREGAKVIWS YVDRILGQPS LIRESSRGKY PWSGSASRVL STLRGGGKES TSKTGKGFGD VILRPALEKR IEQLANATAN TKAHQAPFRN
401: ILFYGPPGTG KTMAARELAR RSGLDYALMT GGDVAPLGAQ AVTKIHQLFD WSKKSKRGLL LFIDEADAFL CERNKTYMSE AQRSALNALL FRTGDQSKDI
501: VLALATNRPG DLDSAVADRI DETLEFPLPG EEERFKLLNL YLEKYISKTN LKKPGLLQSL FKKEQQTIEI KGVTEDLLKE AAAKTKGFSG REIAKLMASV
601: QAAVYGSANC LLDANLFREV IDYKVAEHQQ RKKLAGTDAG NKKK

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXI0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.