CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY43155	Canola	plastid	89.33	96.72
CDY23468	Canola	cytosol	57.48	94.5
AT3G03060.1	Thale cress	plastid	86.94	86.94
CDY49920	Canola	plastid	87.9	86.39
CDY16967	Canola	cytosol	52.71	85.53
KRH24032	Soybean	mitochondrion, nucleus	77.39	78.77
Solyc03g097020.2.1	Tomato	nucleus	78.03	77.53
CDX69409	Canola	plastid	78.82	77.34
VIT_16s0039g02110.t01	Wine grape	plasma membrane	77.71	77.34
KRH29004	Soybean	nucleus	76.27	77.26
CDX85480	Canola	plastid	74.68	75.65
HORVU0Hr1G016640.4	Barley	cytosol, nucleus, peroxisome	60.51	74.51
CDY38078	Canola	plastid	73.89	74.48
TraesCS6B01G294300.1	Wheat	peroxisome	63.22	74.34
GSMUA_Achr4P17050_001	Banana	vacuole	71.02	73.0
HORVU0Hr1G032110.1	Barley	cytosol, nucleus	65.61	71.28
CDY23469	Canola	plastid	18.95	68.79
Os02t0697600-01	Rice	mitochondrion	67.83	66.56
TraesCS6A01G266900.1	Wheat	peroxisome, plastid	67.36	66.51
TraesCS6D01G247700.1	Wheat	peroxisome, plastid	67.36	66.51
HORVU6Hr1G067630.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	66.4	65.67
EES07415	Sorghum	plastid	66.72	64.56
Zm00001d017707_P003	Maize	plastid	65.29	63.66
CDY64607	Canola	plastid	60.35	63.48
Zm00001d051535_P001	Maize	plastid	65.61	63.0
CDX69234	Canola	cytosol, plastid	59.87	62.88
PGSC0003DMT400008177	Potato	cytosol	10.51	62.26
CDY36475	Canola	plastid	61.31	61.11
CDY16968	Canola	cytosol, extracellular, plastid	22.61	60.43
CDY30315	Canola	plastid	60.51	57.4
CDY51218	Canola	plastid	60.35	52.86
CDY29229	Canola	mitochondrion	28.34	48.5
CDX96098	Canola	mitochondrion	16.56	43.7
CDX68520	Canola	cytosol	5.1	20.78
CDX94544	Canola	mitochondrion	17.04	17.57
CDY16678	Canola	cytosol	3.03	16.67
CDX83073	Canola	endoplasmic reticulum	8.92	14.74
CDY16679	Canola	mitochondrion	4.46	14.36
CDY71527	Canola	mitochondrion	5.89	14.07
CDX68521	Canola	mitochondrion	3.03	13.1

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.2	GO:A0A078GVP6	UniProt:A0A078GVP6	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
EnsemblPlants:CDY28733	ProteinID:CDY28733	ProteinID:CDY28733.1	ncoils:Coil	InterPro:DUF3523	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
EnsemblPlantsGene:GSBRNA2T00041371001	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF12037	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0004EF2E0A	SEG:seg	:	:

Description

BnaCnng06190DBnaCnng06190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GVP6]

Coordinates

chrLK032225:+:469767..472878

Molecular Weight (calculated)

69602.5 Da

IEP (calculated)

9.667

GRAVY (calculated)

-0.625

Length

628 amino acids

Sequence
(BLAST)

001: MAQKCAIGLF SAIAAASSSF SKSKVAAADG PPPPQHQAAS DPESSAPPRA RNDNPRTSSG GFDPEALERG AKALKEINSS SYAKQVFEGI KQKEETKQTE
101: FAAKGQEYKA MQAQAETERQ KVIYDEQKKL AQHQAQTKSQ MARYEDDLAR KRMQACNFQH CFTTSRAFAE NEYHRTRNQE LVRMQEDSAI RQEQSRRATE
201: EQIQAQRRQT EREKAEIERE TIKVKSIAEA EGRAHEARLA EDVNRRMLVD RANAEREKWV ATINTTFEHI GGGLRAILTD QNKLIVAVGG ATALAAGIYT
301: TREGARVIWS YVDRILGQPS LIRESSRGKY PWSGSVSRAL STLRGKGSAI KNGKGFGDVI LHPSLQKRIE HLAKATANTK SHQAPFRNML FYGPPGTGKT
401: MVARELARKS GLDYALMTGG DVAPLGSQAV TKIHQLFDWG KKSKRGLLLF IDEADAFLCE RNKTYMSEAQ RSALNALLFR TGDQSKDIVL ALATNRPGDL
501: DSAVADRVDE VLEFPLPGEG ERSKLLSLYL EKYIAQAGPT KPGLFDRLFK KEQQKIEIKG VTEELLEEAA AKTEGFSGRE IAKLMASVQA AVYGSEDCVL
601: DSVLFREVVD YKVAEHQQRR KLAGTDSK

Best Arabidopsis Sequence Match ( AT3G03060.1 )
(BLAST)

001: MAQKCAIGLI SALAASASLA KSKVASADGP FNLSGFSTSA NPQQQASPPP PSLAGEESSA PPRARNDNPR TSSGGFDPEA LERGAKALKE INHSSYAKKV
101: FESIKQQEET KQTEFATKAQ EFKAMQAQAE TERHKVIYDE QKKLAQHQAQ TKSQMARYED DLARKRMQAE NEFHRTRNQE LVKMQEDSAI RQEQARRATE
201: EQIQAQRRQT EREKAEIERE TIRVKAIAEA EGRAHEARLA EDVNRRMLVD RANAEREKWV AAINTTFDHI GGGLRAILTD QNKLIVAVGG VTALAAGIYT
301: TREGAKVIWS YVDRILGQPS LIRESSRGKY PWSGSLSRVM STLRGKESAS KNGKRFGDVI LHPPLAKRIE HLATSTANTK LHQAPFRNIL LHGPPGTGKT
401: MAARELARKS GLDYALMTGG DVAPLGAQAV TKIHELFDWG KKSKRGLLLF IDEADAFLCE RNKTYMSEAQ RSALNALLFR TGDQSKDIVL ALATNRPGDL
501: DSAVADRVDE VLEFPLPGEE ERFKLLNLYL EKYIAEAGPS KPGLFDRLFK KEQQKIEIKG VTEELLKEAA AKTEGFSGRE IAKLMASVQA AVYGSEDCVL
601: DSMLFREVVD YKVAEHQQRR KLAGVDSK

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WVF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.