Factsheet for VIT_16s0039g02110.t01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23468	Canola	cytosol	53.09	87.7
CDY16967	Canola	cytosol	51.35	83.72
KRH29004	Soybean	nucleus	81.14	82.58
Solyc03g097020.2.1	Tomato	nucleus	81.62	81.49
KRH24032	Soybean	mitochondrion, nucleus	79.24	81.04
Bra021376.1-P	Field mustard	plastid	75.12	80.34
CDY43155	Canola	plastid	73.38	79.83
AT3G03060.1	Thale cress	plastid	78.92	79.3
Bra032021.1-P	Field mustard	plastid	72.74	79.14
GSMUA_Achr4P17050_001	Banana	vacuole	76.55	79.05
CDX69409	Canola	plastid	79.24	78.12
CDY49920	Canola	plastid	79.08	78.09
CDY28733	Canola	plastid	77.34	77.71
Bra008582.1-P	Field mustard	plastid	71.16	77.02
AT5G16930.1	Thale cress	plastid	77.81	76.24
TraesCS6B01G294300.1	Wheat	peroxisome	64.34	76.03
HORVU0Hr1G016640.4	Barley	cytosol, nucleus, peroxisome	61.33	75.88
CDX85480	Canola	plastid	74.33	75.65
CDY38078	Canola	plastid	73.53	74.48
Bra023590.1-P	Field mustard	plastid	74.48	74.13
HORVU0Hr1G032110.1	Barley	cytosol, nucleus	66.88	73.01
Os02t0697600-01	Rice	mitochondrion	71.16	70.16
TraesCS6D01G247700.1	Wheat	peroxisome, plastid	70.68	70.13
TraesCS6A01G266900.1	Wheat	peroxisome, plastid	70.52	69.97
HORVU6Hr1G067630.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	69.41	68.98
EES07415	Sorghum	plastid	70.05	68.1
Zm00001d017707_P003	Maize	plastid	69.26	67.86
VIT_04s0023g01900.t01	Wine grape	plastid	67.04	67.46
Zm00001d051535_P001	Maize	plastid	69.73	67.28
CDY23469	Canola	plastid	17.12	62.43
CDY16968	Canola	cytosol, extracellular, plastid	22.98	61.7
PGSC0003DMT400008177	Potato	cytosol	10.14	60.38
VIT_10s0116g00260.t01	Wine grape	cytosol	9.51	23.9
VIT_10s0116g00330.t01	Wine grape	mitochondrion	15.69	16.61

Protein Annotations

EntrezGene:100266545	wikigene:100266545	Gene3D:3.40.50.300	MapMan:35.2	InterPro:AAA+_ATPase	EMBL:AM429090
InterPro:ATPase_AAA_core	ProteinID:CAN78021	ProteinID:CAN78021.1	ProteinID:CBI26524	ProteinID:CBI26524.3	ncoils:Coil
UniProt:D7T7Q3	InterPro:DUF3523	EMBL:FN595750	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100266545	wikigene:LOC100266545
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF12037	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3	SMART:SM00382
SUPFAM:SSF52540	SignalP:SignalP-noTM	UniParc:UPI0001984D84	ArrayExpress:VIT_16s0039g02110	EnsemblPlantsGene:VIT_16s0039g02110	EnsemblPlants:VIT_16s0039g02110.t01
unigene:Vvi.14949	RefSeq:XP_002274077	RefSeq:XP_002274077.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr16:+:2166951..2173724

Molecular Weight (calculated)

70070.2 Da

IEP (calculated)

9.760

GRAVY (calculated)

-0.594

Length

631 amino acids

Sequence
(BLAST)

001: MAKATVAGLI SALASAALSV DHAYADGPFN FPPFSSSSPA PSPPKAAPEA PPPSDVETSK RVRNDNPRTT SAGFDPEALE RGAKALREIT SSSHAKKVFE
101: VTKKQEETRQ AEFTAKSAEF KAMQAHAETE RQKVIYEEQK KLAQQQAQIK SQMARYEDEL ARKRMQAENE HQRARNQELV KMQEESSIRQ EQARRATEEQ
201: IQAQRRQTER EKAEIERETI RVRAMAEAEG RAHEAKLAED VNRRMLVERA SAEREKWVAA INTTFDHIGG GLRAILTDQN KLVVAVGGVT ALAAGIYTTR
301: EGAKVIWSYV DRILGQPSLI RESSRGKYPW SGLFSHRMST LLRGTEKGSS LTNGKGFGDV ILHPSLQKRI EQLASATANT KSHQAPFRNM LFYGPPGTGK
401: TMAARELAKK SGLDYALMTG GDVAPLGSQA VTKIHQLFDW AKKSRKGLLL FIDEADAFLC ERNKTYMSEA QRSALNALLF RTGDQSKDIV LALATNRPGD
501: LDSAMADRID EVLEFPLPGE DERFKLLKLY LDKYIAHAGE KKSSWFKQLF QRQQQKIEIK GLTDEVIREA AAKTEGFSGR EIAKLMASVQ AAVYGSENCV
601: LDSNLFREVV DYKVAEHQQR KKLAASDGGS I

Best Arabidopsis Sequence Match ( AT3G03060.1 )
(BLAST)

001: MAQKCAIGLI SALAASASLA KSKVASADGP FNLSGFSTSA NPQQQASPPP PSLAGEESSA PPRARNDNPR TSSGGFDPEA LERGAKALKE INHSSYAKKV
101: FESIKQQEET KQTEFATKAQ EFKAMQAQAE TERHKVIYDE QKKLAQHQAQ TKSQMARYED DLARKRMQAE NEFHRTRNQE LVKMQEDSAI RQEQARRATE
201: EQIQAQRRQT EREKAEIERE TIRVKAIAEA EGRAHEARLA EDVNRRMLVD RANAEREKWV AAINTTFDHI GGGLRAILTD QNKLIVAVGG VTALAAGIYT
301: TREGAKVIWS YVDRILGQPS LIRESSRGKY PWSGSLSRVM STLRGKESAS KNGKRFGDVI LHPPLAKRIE HLATSTANTK LHQAPFRNIL LHGPPGTGKT
401: MAARELARKS GLDYALMTGG DVAPLGAQAV TKIHELFDWG KKSKRGLLLF IDEADAFLCE RNKTYMSEAQ RSALNALLFR TGDQSKDIVL ALATNRPGDL
501: DSAVADRVDE VLEFPLPGEE ERFKLLNLYL EKYIAEAGPS KPGLFDRLFK KEQQKIEIKG VTEELLKEAA AKTEGFSGRE IAKLMASVQA AVYGSEDCVL
601: DSMLFREVVD YKVAEHQQRR KLAGVDSK

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WVF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.