CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16967	Canola	cytosol	89.53	88.37
Bra021376.1-P	Field mustard	plastid	98.17	63.56
CDY43155	Canola	plastid	95.55	62.93
HORVU0Hr1G016640.4	Barley	cytosol, nucleus, peroxisome	81.68	61.18
PGSC0003DMT400008177	Potato	cytosol	16.75	60.38
TraesCS6B01G294300.1	Wheat	peroxisome	82.2	58.8
CDY49920	Canola	plastid	97.38	58.22
CDY28733	Canola	plastid	94.5	57.48
AT3G03060.1	Thale cress	plastid	92.41	56.21
HORVU0Hr1G032110.1	Barley	cytosol, nucleus	81.68	53.98
CDX69409	Canola	plastid	89.53	53.44
VIT_16s0039g02110.t01	Wine grape	plasma membrane	87.7	53.09
KRH24032	Soybean	mitochondrion, nucleus	85.08	52.67
KRH29004	Soybean	nucleus	84.82	52.26
Solyc03g097020.2.1	Tomato	nucleus	85.86	51.9
GSMUA_Achr4P17050_001	Banana	vacuole	81.94	51.23
CDX85480	Canola	plastid	81.94	50.48
CDY38078	Canola	plastid	81.15	49.76
TraesCS6A01G266900.1	Wheat	peroxisome, plastid	82.2	49.37
TraesCS6D01G247700.1	Wheat	peroxisome, plastid	82.2	49.37
HORVU6Hr1G067630.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	81.41	48.98
Os02t0697600-01	Rice	mitochondrion	80.89	48.28
EES07415	Sorghum	plastid	80.37	47.3
Zm00001d017707_P003	Maize	plastid	78.8	46.74
Zm00001d051535_P001	Maize	plastid	79.84	46.64
CDY64607	Canola	plastid	70.94	45.39
CDX69234	Canola	cytosol, plastid	70.42	44.98
CDY36475	Canola	plastid	70.94	43.02
CDY30315	Canola	plastid	70.68	40.79
CDY29229	Canola	mitochondrion	38.48	40.05
CDY51218	Canola	plastid	70.94	37.8
CDY16678	Canola	cytosol	4.97	16.67
CDX68520	Canola	cytosol	6.54	16.23
CDX96098	Canola	mitochondrion	8.38	13.45
CDX94544	Canola	mitochondrion	20.16	12.64
CDY16679	Canola	mitochondrion	6.02	11.79
CDX83073	Canola	endoplasmic reticulum	9.16	9.21
CDX68521	Canola	mitochondrion	2.09	5.52
CDY71527	Canola	mitochondrion	2.09	3.04
CDY23469	Canola	plastid	0.79	1.73
CDY16968	Canola	cytosol, extracellular, plastid	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078GFQ4	UniProt:A0A078GFQ4	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
EnsemblPlants:CDY23468	ProteinID:CDY23468	ProteinID:CDY23468.1	InterPro:DUF3523	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	EnsemblPlantsGene:GSBRNA2T00022086001
InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF12037	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI0004EE8F54	SEG:seg	:	:	:

Description

BnaC04g49960DBnaC04g49960D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GFQ4]

Coordinates

chrLK032143:-:623782..625492

Molecular Weight (calculated)

41865.3 Da

IEP (calculated)

9.812

GRAVY (calculated)

-0.291

Length

382 amino acids

Sequence
(BLAST)

001: MLVDRANAER EKWVAAINTT FDHIGGGLRA ILTDQNKLVV AVGGATALAA GIYTTREGAK VIWSYVDRIL GQPSLIRESS RGKYPWSGSV SRVMSTLRGK
101: GSAASNGKGF GDVILHPSLQ KRIEHLANAT ANTKSHQAPF RNMLFYGPPG TGKTMAAREL ARKSGLDYAL MTGGDVAPLG SQAVTKIHQL FDWGKKSKRG
201: LLLFIDEADA FLCERNKTYM SEAQRSALNA LLFRTGDQSK DIVLALATNR PGDLDSAVAD RVDEVLEFPL PGEEERFKLL SLYLEKYIAQ AGPRKPGLFD
301: RLFKKEQQKI EIKSVTEELL KEAAAKTEGF SGREIAKLMA SVQAAVYGSE DCVLDSVLFR EVVDYKVAEH QQRRKLAGTD AK

Best Arabidopsis Sequence Match ( AT2G18330.1 )
(BLAST)

001: MAASRLCSAA AIAAAFTSMS MSQNRAYADS RFRFPFFSSS PPAEESPTDH KSSSNSKSET KPDSDEPKGS GFDPESLERG AKALREINSS PHSKQVFDLM
101: RKQEKTRLAE LAAEKEHNEA IQASKDIERQ RKLAEDQRNL VQQQAQAKAQ NLRYEDELAR KRMQTDNEAQ RRHNAELVSM QEASSIRKEK ARIATEEQIQ
201: AQQRETEKER AELERETIRV KAMAEAEGRA HEAKLTEEQN RRMLLDKING EREKWLAAIN TTFSHIEGGV RTLLTDRSKL IMTVGGVTAL AAGVYTTREG
301: ARVTWGYINR ILGQPSLIRE SSMGRFPWAG SVSQFKNKLS TAAGAAASAE GEKPLENVIL HRSLKTRIER LARATANTKS HKAPFRNMMF YGPPGTGKTM
401: VAREIARKSG LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR SALNALLFRT GDQSRDIVLV LATNRPGDLD
501: SAVTDRIDEV IEFPLPGEEE RFKLLKLYLN KYLMGDDKKG EKDSNLKWSN LFKKKKSQKI TIEGDLTDQV IKEAAKKTEG FSGREIAKLV AGVQAAVYGR
601: QDCVLDSQLF EEIVDYKIEE HHQRIRLATE GGQSFP

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.