CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 1
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

nucleus: 21132161
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29004	Soybean	nucleus	93.35	92.9
CDY23468	Canola	cytosol	52.67	85.08
CDY16967	Canola	cytosol	50.73	80.88
VIT_16s0039g02110.t01	Wine grape	plasma membrane	81.04	79.24
Bra032021.1-P	Field mustard	plastid	73.91	78.62
CDY43155	Canola	plastid	73.91	78.62
Solyc03g097020.2.1	Tomato	nucleus	79.74	77.85
CDY28733	Canola	plastid	78.77	77.39
Bra021376.1-P	Field mustard	plastid	73.74	77.12
AT3G03060.1	Thale cress	plastid	78.12	76.75
TraesCS6B01G294300.1	Wheat	peroxisome	65.48	75.66
GSMUA_Achr4P17050_001	Banana	vacuole	74.55	75.29
CDY49920	Canola	plastid	77.63	74.96
HORVU0Hr1G016640.4	Barley	cytosol, nucleus, peroxisome	61.91	74.9
CDX69409	Canola	plastid	76.01	73.28
AT5G16930.1	Thale cress	plastid	75.85	72.67
HORVU0Hr1G032110.1	Barley	cytosol, nucleus	68.07	72.66
Bra008582.1-P	Field mustard	plastid	68.23	72.21
CDX85480	Canola	plastid	71.31	70.97
CDY38078	Canola	plastid	70.66	69.98
Bra023590.1-P	Field mustard	plastid	71.64	69.72
Os02t0697600-01	Rice	mitochondrion	70.5	67.97
TraesCS6D01G247700.1	Wheat	peroxisome, plastid	70.02	67.92
TraesCS6A01G266900.1	Wheat	peroxisome, plastid	69.85	67.77
EES07415	Sorghum	plastid	70.5	67.03
HORVU6Hr1G067630.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	68.23	66.3
Zm00001d017707_P003	Maize	plastid	68.88	65.99
Zm00001d051535_P001	Maize	plastid	69.21	65.29
PGSC0003DMT400008177	Potato	cytosol	10.7	62.26
KRH28685	Soybean	nucleus	63.21	61.81
KRH76781	Soybean	nucleus	62.56	61.66
CDY16968	Canola	cytosol, extracellular, plastid	21.39	56.17
CDY23469	Canola	plastid	15.56	55.49
KRH36514	Soybean	cytosol	3.24	24.39
KRH11495	Soybean	mitochondrion	15.72	16.93
KRH63149	Soybean	cytosol	3.73	16.67

Protein Annotations

EntrezGene:100788478	Gene3D:3.40.50.300	MapMan:35.2	InterPro:AAA+_ATPase	EMBL:ACUP02007166	InterPro:ATPase_AAA_core
ncoils:Coil	InterPro:DUF3523	EnsemblPlantsGene:GLYMA_12G017700	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	UniProt:I1LP75	EnsemblPlants:KRH24032
ProteinID:KRH24032	ProteinID:KRH24032.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF12037	PANTHER:PTHR23075
PANTHER:PTHR23075:SF3	SMART:SM00382	SUPFAM:SSF52540	SignalP:SignalP-noTM	UniParc:UPI000233D030	SEG:seg

Description

hypothetical protein

Coordinates

chr12:+:1240464..1244675

Molecular Weight (calculated)

68478.5 Da

IEP (calculated)

9.844

GRAVY (calculated)

-0.613

Length

617 amino acids

Sequence
(BLAST)

001: MAKTSAAGFL SAIAAATAAS LNQNNAYADG VLPPNPSEVQ PSPAPPKVRN DHPRTTSAGF DPEALERGVK ALREISKSPH GKKVFEVIKK QEETKQTELA
101: AKVAEFRQMK AQHETERQRI IYDEQKKLAQ HQAQTKSQMA KYEDELARKR MQAENEYHRA RNQELVKLQE ESSIRQEQAR RATEEQIQAQ RRQTEREKAE
201: IERETIRVRA MAEAEGRAHE AKLAEDVNRR MLVDRANAER EKWVAAINTT FEHIGGGLRA ILTDQNKLVV AVGGVTALAA GVYTTREGAR VIWGYIDRIL
301: GQPSLIRESS RGKYPWSGMF SRAMGSLSRR TDPGSSSKNG NGFGDVILHP SLQKRIQQLS SATANTKAHQ APFRNMLFYG PPGTGKTMAA RELARKSGLD
401: YALMTGGDVA PLGSQAVTKI HQLFDWAKKS NKGLLLFIDE ADAFLCERNK TYMSEAQRSA LNALLYRTGD QSKDIVLALA TNRPGDLDSA VADRIDEVLE
501: FPLPGEEERF KLLKLYLDKY IAQAGSGKSG FVKDLFKEKP QQIEIKGLTD DIIKEAAAKT EGFSGREIAK LMASVQAAVY GSENCVLDPS LFREVVDYKV
601: AEHQQRRKLA AGDKPMA

Best Arabidopsis Sequence Match ( AT3G03060.1 )
(BLAST)

001: MAQKCAIGLI SALAASASLA KSKVASADGP FNLSGFSTSA NPQQQASPPP PSLAGEESSA PPRARNDNPR TSSGGFDPEA LERGAKALKE INHSSYAKKV
101: FESIKQQEET KQTEFATKAQ EFKAMQAQAE TERHKVIYDE QKKLAQHQAQ TKSQMARYED DLARKRMQAE NEFHRTRNQE LVKMQEDSAI RQEQARRATE
201: EQIQAQRRQT EREKAEIERE TIRVKAIAEA EGRAHEARLA EDVNRRMLVD RANAEREKWV AAINTTFDHI GGGLRAILTD QNKLIVAVGG VTALAAGIYT
301: TREGAKVIWS YVDRILGQPS LIRESSRGKY PWSGSLSRVM STLRGKESAS KNGKRFGDVI LHPPLAKRIE HLATSTANTK LHQAPFRNIL LHGPPGTGKT
401: MAARELARKS GLDYALMTGG DVAPLGAQAV TKIHELFDWG KKSKRGLLLF IDEADAFLCE RNKTYMSEAQ RSALNALLFR TGDQSKDIVL ALATNRPGDL
501: DSAVADRVDE VLEFPLPGEE ERFKLLNLYL EKYIAEAGPS KPGLFDRLFK KEQQKIEIKG VTEELLKEAA AKTEGFSGRE IAKLMASVQA AVYGSEDCVL
601: DSMLFREVVD YKVAEHQQRR KLAGVDSK

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WVF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.