CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16968	Canola	cytosol, extracellular, plastid	67.05	49.36
CDY49920	Canola	plastid	87.86	23.79
Bra021376.1-P	Field mustard	plastid	72.83	21.36
AT3G03060.1	Thale cress	plastid	75.72	20.86
CDY28733	Canola	plastid	68.79	18.95
CDY38078	Canola	plastid	67.63	18.78
CDX85480	Canola	plastid	66.47	18.55
CDX69409	Canola	plastid	65.9	17.81
VIT_16s0039g02110.t01	Wine grape	plasma membrane	62.43	17.12
Solyc03g097020.2.1	Tomato	nucleus	57.8	15.82
KRH29004	Soybean	nucleus	56.07	15.65
KRH24032	Soybean	mitochondrion, nucleus	55.49	15.56
CDY43155	Canola	plastid	49.13	14.66
GSMUA_Achr4P17050_001	Banana	vacuole	45.66	12.93
Os02t0697600-01	Rice	mitochondrion	45.09	12.19
EES07415	Sorghum	plastid	43.35	11.56
TraesCS6D01G247700.1	Wheat	peroxisome, plastid	42.2	11.48
TraesCS6A01G266900.1	Wheat	peroxisome, plastid	42.2	11.48
Zm00001d017707_P003	Maize	plastid	42.2	11.34
CDY36475	Canola	plastid	40.46	11.11
HORVU6Hr1G067630.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	40.46	11.02
Zm00001d051535_P001	Maize	plastid	41.62	11.01
CDX96098	Canola	mitochondrion	15.03	10.92
HORVU0Hr1G032110.1	Barley	cytosol, nucleus	35.26	10.55
CDY30315	Canola	plastid	37.57	9.82
CDY64607	Canola	plastid	32.95	9.55
CDX69234	Canola	cytosol, plastid	32.37	9.36
CDY51218	Canola	plastid	36.42	8.79
TraesCS6B01G294300.1	Wheat	peroxisome	23.12	7.49
CDY71527	Canola	mitochondrion	10.98	7.22
HORVU0Hr1G016640.4	Barley	cytosol, nucleus, peroxisome	16.76	5.69
CDX83073	Canola	endoplasmic reticulum	8.09	3.68
CDX94544	Canola	mitochondrion	12.72	3.61
CDY29229	Canola	mitochondrion	6.36	3.0
CDX68521	Canola	mitochondrion	2.31	2.76
CDY16678	Canola	cytosol	0.58	0.88
CDY23468	Canola	cytosol	1.73	0.79
CDY16967	Canola	cytosol	1.73	0.78
CDX68520	Canola	cytosol	0.58	0.65
CDY16679	Canola	mitochondrion	0.58	0.51
PGSC0003DMT400008177	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY23469	EnsemblPlantsGene:GSBRNA2T00022087001	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	InterPro:DUF3523
PANTHER:PTHR23075	PANTHER:PTHR23075:SF3	PFAM:PF12037	ProteinID:CDY23469	ProteinID:CDY23469.1	SEG:seg
UniParc:UPI0004EE1DE4	UniProt:A0A078GDN5	MapMan:35.2	:	:	:

Description

BnaC04g49970DBnaC04g49970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GDN5]

Coordinates

chrLK032143:-:625660..626844

Molecular Weight (calculated)

18713.7 Da

IEP (calculated)

9.008

GRAVY (calculated)

-0.843

Length

173 amino acids

Sequence
(BLAST)

001: MAQKCAIGLI SAVAASVSLS QSKVAAADGP FTFPPANPQQ QAASSPPSTA GEESSAPPPP PRARNDNPRT SSGGFDPEAL ERGAKALKEI NNSSYAKNVF
101: ESIKQQEETK QTEFAAKAQE YKAMQAQAET ERQKVIYDEH KKLAQHQAQT KSQMARYEDD LARKRMQASV FTG

Best Arabidopsis Sequence Match ( AT3G03060.1 )
(BLAST)

001: MAQKCAIGLI SALAASASLA KSKVASADGP FNLSGFSTSA NPQQQASPPP PSLAGEESSA PPRARNDNPR TSSGGFDPEA LERGAKALKE INHSSYAKKV
101: FESIKQQEET KQTEFATKAQ EFKAMQAQAE TERHKVIYDE QKKLAQHQAQ TKSQMARYED DLARKRMQAE NEFHRTRNQE LVKMQEDSAI RQEQARRATE
201: EQIQAQRRQT EREKAEIERE TIRVKAIAEA EGRAHEARLA EDVNRRMLVD RANAEREKWV AAINTTFDHI GGGLRAILTD QNKLIVAVGG VTALAAGIYT
301: TREGAKVIWS YVDRILGQPS LIRESSRGKY PWSGSLSRVM STLRGKESAS KNGKRFGDVI LHPPLAKRIE HLATSTANTK LHQAPFRNIL LHGPPGTGKT
401: MAARELARKS GLDYALMTGG DVAPLGAQAV TKIHELFDWG KKSKRGLLLF IDEADAFLCE RNKTYMSEAQ RSALNALLFR TGDQSKDIVL ALATNRPGDL
501: DSAVADRVDE VLEFPLPGEE ERFKLLNLYL EKYIAEAGPS KPGLFDRLFK KEQQKIEIKG VTEELLKEAA AKTEGFSGRE IAKLMASVQA AVYGSEDCVL
601: DSMLFREVVD YKVAEHQQRR KLAGVDSK

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WVF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.