CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY71527	Canola	mitochondrion	36.62	84.79
CDY16678	Canola	cytosol	15.11	80.7
Bra029485.1-P	Field mustard	mitochondrion	70.28	73.16
AT4G04180.1	Thale cress	mitochondrion	71.59	72.67
VIT_10s0116g00260.t01	Wine grape	cytosol	26.27	63.74
Solyc02g036330.2.1	Tomato	cytosol	20.53	61.88
PGSC0003DMT400055268	Potato	cytosol	34.32	59.89
CDX83073	Canola	endoplasmic reticulum	36.29	58.16
GSMUA_Achr7P19880_001	Banana	cytosol	34.32	55.0
GSMUA_Achr10P...	Banana	cytosol	35.63	54.66
KRH11495	Soybean	mitochondrion	50.41	53.58
VIT_10s0116g00330.t01	Wine grape	mitochondrion	49.92	51.01
CDX68520	Canola	cytosol	12.64	50.0
KRH36514	Soybean	cytosol	6.57	48.78
KXG30792	Sorghum	mitochondrion	46.8	48.55
HORVU6Hr1G076750.17	Barley	mitochondrion	46.14	47.63
TraesCS6D01G290700.1	Wheat	mitochondrion	46.14	47.39
TraesCS6A01G311400.1	Wheat	mitochondrion, plastid	45.81	47.13
Os02t0740300-01	Rice	mitochondrion	46.47	46.32
TraesCS6B01G341600.1	Wheat	cytosol, plastid	45.98	43.68
Solyc02g036340.2.1	Tomato	nucleus	20.53	33.16
KRH63149	Soybean	cytosol	6.57	28.99
CDY23468	Canola	cytosol	12.64	20.16
CDY16967	Canola	cytosol	12.15	19.12
CDX68521	Canola	mitochondrion	4.27	17.93
CDY43155	Canola	plastid	16.58	17.41
CDY28733	Canola	plastid	17.57	17.04
CDY64607	Canola	plastid	16.58	16.92
CDX69234	Canola	cytosol, plastid	16.58	16.89
PGSC0003DMT400055267	Potato	mitochondrion	6.24	16.89
CDX69409	Canola	plastid	17.41	16.56
CDY38078	Canola	plastid	16.91	16.53
CDY49920	Canola	plastid	17.24	16.43
CDX85480	Canola	plastid	16.58	16.29
CDY36475	Canola	plastid	16.75	16.19
CDY30315	Canola	plastid	16.75	15.41
CDY51218	Canola	plastid	16.58	14.09
CDY29229	Canola	mitochondrion	8.37	13.9
CDY23469	Canola	plastid	3.61	12.72
CDY16968	Canola	cytosol, extracellular, plastid	4.76	12.34
CDY16679	Canola	mitochondrion	2.63	8.21
CDX96098	Canola	mitochondrion	2.96	7.56

Protein Annotations

EnsemblPlants:CDX94544	EnsemblPlantsGene:GSBRNA2T00157794001	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:A0A078E1S0	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
ncoils:Coil	PANTHER:PTHR23073	PANTHER:PTHR23073:SF29	PFAM:PF00004	ProteinID:CDX94544	ProteinID:CDX94544.1
SEG:seg	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0004EEE768	MapMan:35.1	:

Description

BnaC09g22920D

Coordinates

chrLK031882:+:933039..936565

Molecular Weight (calculated)

67364.9 Da

IEP (calculated)

6.856

GRAVY (calculated)

-0.450

Length

609 amino acids

Sequence
(BLAST)

001: MAVLHRLFRA ARVWRGSLSH HPPSQPRGRR ELRRRFHHGT VERSNSKASD VLRSCSTLND SPCFSMAPAV FGALFSLGAI GVAYADSDEA NYKSSSPIDP
101: PPNHVDDISK KDEISNKSSV PADPPPNYAD IAKKERARIQ ELIQSKGSQY SSCPRFNVFV RGQKITLKFQ VPSTCEVAQL IANIGSQLGV KVSDRTGGSD
201: MMLRSWDNPV AWQIALRSVE KKKEAGASED DSDEDLCILI FGSLLTSDKV EVEFIKKGSL TTEELEAFVS ALQVAGTKPG QNKGGRGSAR EASKDKTISQ
301: LESMGVRIYG VNKPLGDDDS VHEISWDNIA GYEQQKREIE DTILMALHSP EVYDDIVRGT RSKFESNRPR AVLFEGPPGT GKTSCARVIA NQAGIPLLYV
401: PLEAVMSKYY GESERLLGAV FSQANELSDG AIIFLDEIDA FAISRDSEMH EATRRVLSVL LRQIDGFEQD KKGVVIAATN RKQDLDPALI SRFDSMIMFG
501: LPDLQTRQEI IAQYAKQLSK PELVQLAHAT EAMSGRDIRD VCQGAERTWA SKLIRRAKAD GVEQQQVTLP PIQEYLESAE ARRKALRSVA EQREENLAAR
601: SKKPLLDFE

Best Arabidopsis Sequence Match ( AT4G04180.1 )
(BLAST)

001: MAILDKLFRA SRAWRGSLSH SKSMVPSQSP RARELRRCFH HGNFEQSNSK VNQVLRSCST LNDSPYFSMA PAVLGALFSV GVIGVAYAES DEANNDKSSA
101: PIDPNDETSS APIDPPPNYV DIAKKERARV EELIQSKGTQ YGSYPRFNVA VRGQKITLKF QVPSTCEVAQ LISNIGSQLG VKVSDRTGGS DMLLRAWDNP
201: VAWQITLRSV ENKKKLGESE DDSDDDLCIL IFGSLLTSDK VEVEFIKKGS LTTEELEAFV SALGVAGTKA GQNKGSGSRG STRDSSTDKS ISQLESMGVR
301: IYGVNKPLGD DSMDEISWDN IAGYDQQKRE IEDTILMALH SPEVYDDIVR GTRSKFESNR PRAVLFEGPP GTGKTSCARV IANQAGIPLL YVPLEAVMSK
401: YYGESERLLG AVFSQANELP DGAIIFLDEI DAFAISRDSE MHEATRRVLS VLLRQIDGFE QEKKVVVIAA TNRKQDLDPA LISRFDSMIM FDLPDLQTRQ
501: EIIAQYAKQL SKPELVQLAQ ATEAMSGRDI RDVCQGAERT WASKLIRRAK AGGEEQKITL PPIQEYLESA EARRKSLRSV TEQKEQKFAA RSKKPLLDFE

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G04180]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.