Factsheet for PGSC0003DMT400055268

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g036330.2.1	Tomato	cytosol	56.73	98.02
VIT_10s0116g00260.t01	Wine grape	cytosol	45.85	63.74
GSMUA_Achr7P19880_001	Banana	cytosol	61.89	56.84
GSMUA_Achr10P...	Banana	cytosol	59.31	52.14
KRH36514	Soybean	cytosol	11.75	50.0
CDY16678	Canola	cytosol	15.76	48.25
KRH11495	Soybean	mitochondrion	62.75	38.22
KXG30792	Sorghum	mitochondrion	62.75	37.31
Zm00001d007450_P001	Maize	cytosol	8.6	37.04
TraesCS6A01G311400.1	Wheat	mitochondrion, plastid	60.74	35.81
HORVU6Hr1G076750.17	Barley	mitochondrion	60.46	35.76
TraesCS6D01G290700.1	Wheat	mitochondrion	60.74	35.75
VIT_10s0116g00330.t01	Wine grape	mitochondrion	61.03	35.74
Bra029485.1-P	Field mustard	mitochondrion	59.6	35.56
Os02t0740300-01	Rice	mitochondrion	61.6	35.19
AT4G04180.1	Thale cress	mitochondrion	59.6	34.67
CDX94544	Canola	mitochondrion	59.89	34.32
TraesCS6B01G341600.1	Wheat	cytosol, plastid	60.46	32.92
Bra029941.1-P	Field mustard	cytosol	16.91	28.78
CDX83073	Canola	endoplasmic reticulum	27.79	25.53
PGSC0003DMT400008177	Potato	cytosol	6.88	22.64
PGSC0003DMT400040085	Potato	extracellular	21.78	21.35
CDX68520	Canola	cytosol	7.16	16.23
PGSC0003DMT400008178	Potato	cytosol, mitochondrion, peroxisome	2.29	6.96
KRH63149	Soybean	cytosol	2.58	6.52
CDY71527	Canola	mitochondrion	3.72	4.94
PGSC0003DMT400055267	Potato	mitochondrion	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400055268	EnsemblPlantsGene:PGSC0003DMG402021461	Gene3D:1.10.8.60	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase
PANTHER:PTHR23073	PANTHER:PTHR23073:SF29	PFAM:PF00004	PGSC:PGSC0003DMG402021461	ScanProsite:PS00674	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI0002969297	UniProt:M1BXP6	MapMan:35.1	:	:

Description

26S protease regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG402021461]

Coordinates

chr2:-:17699735..17707562

Molecular Weight (calculated)

38929.3 Da

IEP (calculated)

6.186

GRAVY (calculated)

-0.411

Length

349 amino acids

Sequence
(BLAST)

001: MKPVSFTDEE LDALAYVLQF AGQQKALDFR SKGVPSADKT VTTLESMGVK IFGINVSTSG NPKVNIAWEN IAGYNQQKRE IEDTILLALQ SPEVYDDIAR
101: GTRRKFETNR PRAVLFEGPP GTGKTSCARV IANQAGVPLL YVPLEIIMSK YYGESERLLG KVFSLANDFP DGAIVFLDEV DSFATARDGE THEATRRLLS
201: VLLRQIDGFE QEKKVVVVAA TNRKQDLDPA LISRFDSMIT FPLPDQQTRQ EIAAQYAKHL TDSELSEFAR ATEGLSGRDM RDVCQQAERH WASKIIRGQA
301: PKHEGSGGSL PPLQDYIDSA RNRQRALFDI EIQKRSMNPT AKKPLFDFV

Best Arabidopsis Sequence Match ( AT4G04180.2 )
(BLAST)

001: MAILDKLFRA SRAWRGSLSH SKSMVPSQSP RARELRRCFH HGNFEQSNSK VNQVLRSCST LNDSPYFSMA PAVLGALFSV GVIGVAYAES DEANNDKSSA
101: PIDPNDETSS APIDPPPNYV DIAKKERARV EELIQSKGTQ YGSYPRFNVA ITLKFQVPST CEVAQLISNI GSQLGVKVSD RTGGSDMLLR AWDNPVAWQI
201: TLRSVENKKK LGESEDDSDD DLCILIFGSL LTSDKVEVEF IKKGSLTTEE LEAFVSALGV AGTKAGQNKG SGSRGSTRDS STDKSISQLE SMGVRIYGVN
301: KPLGDDSMDE ISWDNIAGYD QQKREIEDTI LMALHSPEVY DDIVRGTRSK FESNRPRAVL FEGPPGTGKT SCARVIANQA GIPLLYVPLE AVMSKYYGES
401: ERLLGAVFSQ ANELPDGAII FLDEIDAFAI SRDSEMHEAT RRVLSVLLRQ IDGFEQEKKV VVIAATNRKQ DLDPALISRF DSMIMFDLPD LQTRQEIIAQ
501: YAKQLSKPEL VQLAQATEAM SGRDIRDVCQ GAERTWASKL IRRAKAGGEE QKITLPPIQE YLESAEARRK SLRSVTEQKE QKFAARSKKP LLDFE

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G04180]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.