Factsheet for TraesCS6D01G290700.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G311400.1	Wheat	mitochondrion, plastid	97.64	97.8
HORVU6Hr1G076750.17	Barley	mitochondrion	89.88	90.34
TraesCS6B01G341600.1	Wheat	cytosol, plastid	95.62	88.46
KXG30792	Sorghum	mitochondrion	74.03	74.79
Zm00001d017988_P002	Maize	mitochondrion	72.51	71.43
Os02t0740300-01	Rice	mitochondrion	69.98	67.92
Solyc02g036330.2.1	Tomato	cytosol	22.09	64.85
VIT_10s0116g00260.t01	Wine grape	cytosol	26.48	62.55
GSMUA_Achr7P19880_001	Banana	cytosol	38.95	60.79
PGSC0003DMT400055268	Potato	cytosol	35.75	60.74
GSMUA_Achr10P...	Banana	cytosol	39.63	59.19
KRH36514	Soybean	cytosol	7.25	52.44
KRH11495	Soybean	mitochondrion	50.08	51.83
VIT_10s0116g00330.t01	Wine grape	mitochondrion	49.24	48.99
Bra029485.1-P	Field mustard	mitochondrion	47.72	48.38
AT4G04180.1	Thale cress	mitochondrion	48.06	47.5
CDY16678	Canola	cytosol	8.94	46.49
CDX94544	Canola	mitochondrion	47.39	46.14
CDX83073	Canola	endoplasmic reticulum	25.46	39.74
Bra029941.1-P	Field mustard	cytosol	13.66	39.51
Solyc02g036340.2.1	Tomato	nucleus	20.74	32.63
KRH63149	Soybean	cytosol	6.91	29.71
CDY71527	Canola	mitochondrion	12.48	28.14
CDX68520	Canola	cytosol	6.91	26.62
PGSC0003DMT400055267	Potato	mitochondrion	7.08	18.67
TraesCS6D01G253600.1	Wheat	mitochondrion	16.02	15.57
TraesCS6D01G247700.1	Wheat	peroxisome, plastid	15.01	13.99

Protein Annotations

EnsemblPlants:TraesCS6D01G290700.1	EnsemblPlantsGene:TraesCS6D01G290700	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR23073
PANTHER:PTHR23073:SF29	PFAM:PF00004	ScanProsite:PS00674	SEG:seg	SMART:SM00382	SUPFAM:SSF52540
TIGR:cd00009	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:401176592..401182944

Molecular Weight (calculated)

64419.0 Da

IEP (calculated)

7.084

GRAVY (calculated)

-0.267

Length

593 amino acids

Sequence
(BLAST)

001: MLLRRRLPAT RLLRQLQTGA AAASTTTSSP PPPPPLQKPI AASASASPST ALGSRLGFPN AKSRASSSRS AAFLAAGAAA ALASLSVVAY ADANEEGVAD
101: GAVSTDAAPV EDLARKERKR IMELIESRGM QPGSYPKFEV AIKGQKVVVK FNVPSTCNIS RLIVDLVTHI GLEAEQCVGG SEILLRAWDS AAARQITLNP
201: PKTTASTGEN KEDSLCILIF EPLVGSEYAV SPYEIEFIKP DSFSSKELEG LVSALKIAGQ KDVKTSSGKA STKGSGQRYK HLPSIEKTVS DLEDMGVRVY
301: GFDETSSVPM DGTVMWENIA GYEHQKREIE DTVLLALQNP QIYDDIARGT RCKFETNRPR AVLFEGPPGT GKTSSARVIA KQAGVPLLYV PLEIIMSKYY
401: GESERLLGSV FSLANNLPDG GIIFLDEVDS FAISRDSEMH EATRRILSVI LRQIDGFEQD RRVVVIAATN RKEDLDPALI SRFDSMICFG LPDQQSRAEI
501: AAQYAKHLTK SELVQFSLAT EEMAGRDIRD ICMQAERHWA SKFIRGQIPK DEKGEPPLPP IDEYVACAEQ RRKSLPDRTR PAASRSGPPL KLA

Best Arabidopsis Sequence Match ( AT4G04180.1 )
(BLAST)

001: MAILDKLFRA SRAWRGSLSH SKSMVPSQSP RARELRRCFH HGNFEQSNSK VNQVLRSCST LNDSPYFSMA PAVLGALFSV GVIGVAYAES DEANNDKSSA
101: PIDPNDETSS APIDPPPNYV DIAKKERARV EELIQSKGTQ YGSYPRFNVA VRGQKITLKF QVPSTCEVAQ LISNIGSQLG VKVSDRTGGS DMLLRAWDNP
201: VAWQITLRSV ENKKKLGESE DDSDDDLCIL IFGSLLTSDK VEVEFIKKGS LTTEELEAFV SALGVAGTKA GQNKGSGSRG STRDSSTDKS ISQLESMGVR
301: IYGVNKPLGD DSMDEISWDN IAGYDQQKRE IEDTILMALH SPEVYDDIVR GTRSKFESNR PRAVLFEGPP GTGKTSCARV IANQAGIPLL YVPLEAVMSK
401: YYGESERLLG AVFSQANELP DGAIIFLDEI DAFAISRDSE MHEATRRVLS VLLRQIDGFE QEKKVVVIAA TNRKQDLDPA LISRFDSMIM FDLPDLQTRQ
501: EIIAQYAKQL SKPELVQLAQ ATEAMSGRDI RDVCQGAERT WASKLIRRAK AGGEEQKITL PPIQEYLESA EARRKSLRSV TEQKEQKFAA RSKKPLLDFE

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G04180]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.