Factsheet for VIT_10s0116g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g036330.2.1	Tomato	cytosol	52.99	65.84
CDY16678	Canola	cytosol	21.12	46.49
KRH36514	Soybean	cytosol	15.14	46.34
PGSC0003DMT400055268	Potato	cytosol	63.74	45.85
GSMUA_Achr7P19880_001	Banana	cytosol	62.55	41.32
VIT_10s0116g00330.t01	Wine grape	mitochondrion	92.03	38.76
GSMUA_Achr10P...	Banana	cytosol	57.77	36.52
Zm00001d007450_P001	Maize	cytosol	11.55	35.8
KXG30792	Sorghum	mitochondrion	62.95	26.92
HORVU6Hr1G076750.17	Barley	mitochondrion	62.95	26.78
KRH11495	Soybean	mitochondrion	60.96	26.7
TraesCS6A01G311400.1	Wheat	mitochondrion, plastid	62.55	26.52
AT4G04180.1	Thale cress	mitochondrion	63.35	26.5
TraesCS6D01G290700.1	Wheat	mitochondrion	62.55	26.48
CDX94544	Canola	mitochondrion	63.74	26.27
Bra029485.1-P	Field mustard	mitochondrion	60.96	26.15
Os02t0740300-01	Rice	mitochondrion	60.56	24.88
Bra029941.1-P	Field mustard	cytosol	19.92	24.39
TraesCS6B01G341600.1	Wheat	cytosol, plastid	62.15	24.34
CDX83073	Canola	endoplasmic reticulum	34.26	22.63
CDX68520	Canola	cytosol	6.37	10.39
VIT_16s0039g02110.t01	Wine grape	plasma membrane	23.9	9.51
VIT_04s0023g01900.t01	Wine grape	plastid	23.51	9.41
KRH63149	Soybean	cytosol	2.79	5.07
Solyc02g036340.2.1	Tomato	nucleus	4.38	2.92
CDY71527	Canola	mitochondrion	2.39	2.28
PGSC0003DMT400055267	Potato	mitochondrion	0.4	0.44

Protein Annotations

Gene3D:1.10.8.60	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core
ProteinID:CBI32999	ProteinID:CBI32999.3	UniProt:D7TR76	EMBL:FN596012	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0017025	GO:GO:0019538	GO:GO:0030433	GO:GO:0031595
GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800	InterPro:P-loop_NTPase	PFAM:PF00004
ScanProsite:PS00674	PANTHER:PTHR23073	PANTHER:PTHR23073:SF29	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0001BE3BBF
ArrayExpress:VIT_10s0116g00260	EnsemblPlantsGene:VIT_10s0116g00260	EnsemblPlants:VIT_10s0116g00260.t01	:	:	:

Description

No Description!

Coordinates

chr10_random:-:120726..131209

Molecular Weight (calculated)

28291.9 Da

IEP (calculated)

9.029

GRAVY (calculated)

-0.364

Length

251 amino acids

Sequence
(BLAST)

001: MRKPQREYQF KTISLGFLYK VVGTGKTSCA RVIANQAGVP LVYLPLESIM SKYYGESERL LGKVFVHANE FPEGAIVFLD EVDSFAVSRS REMHEATRRI
101: LSVILRQIDG FEQDKKVVVI AATNRKQDLD PALMSRFDSM ITFGLPDNHD RQKIAAQFAK HLTESELVEF ATATEGMSGR DIRDICQQAE RHWASKVIRG
201: QAPKDGDQVI LPPIQVYIES AKTRANTLLS IADQKTEKSN RNQTQPQLAF S

Best Arabidopsis Sequence Match ( AT4G04180.2 )
(BLAST)

001: MAILDKLFRA SRAWRGSLSH SKSMVPSQSP RARELRRCFH HGNFEQSNSK VNQVLRSCST LNDSPYFSMA PAVLGALFSV GVIGVAYAES DEANNDKSSA
101: PIDPNDETSS APIDPPPNYV DIAKKERARV EELIQSKGTQ YGSYPRFNVA ITLKFQVPST CEVAQLISNI GSQLGVKVSD RTGGSDMLLR AWDNPVAWQI
201: TLRSVENKKK LGESEDDSDD DLCILIFGSL LTSDKVEVEF IKKGSLTTEE LEAFVSALGV AGTKAGQNKG SGSRGSTRDS STDKSISQLE SMGVRIYGVN
301: KPLGDDSMDE ISWDNIAGYD QQKREIEDTI LMALHSPEVY DDIVRGTRSK FESNRPRAVL FEGPPGTGKT SCARVIANQA GIPLLYVPLE AVMSKYYGES
401: ERLLGAVFSQ ANELPDGAII FLDEIDAFAI SRDSEMHEAT RRVLSVLLRQ IDGFEQEKKV VVIAATNRKQ DLDPALISRF DSMIMFDLPD LQTRQEIIAQ
501: YAKQLSKPEL VQLAQATEAM SGRDIRDVCQ GAERTWASKL IRRAKAGGEE QKITLPPIQE YLESAEARRK SLRSVTEQKE QKFAARSKKP LLDFE

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G04180]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.