Factsheet for VIT_10s0116g00330.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_10s0116g00260.t01	Wine grape	cytosol	38.76	92.03
Solyc02g036330.2.1	Tomato	cytosol	22.32	65.84
PGSC0003DMT400055268	Potato	cytosol	35.74	61.03
KRH11495	Soybean	mitochondrion	53.36	55.5
GSMUA_Achr7P19880_001	Banana	cytosol	35.23	55.26
GSMUA_Achr10P...	Banana	cytosol	36.58	54.91
AT4G04180.1	Thale cress	mitochondrion	51.34	51.0
Bra029485.1-P	Field mustard	mitochondrion	49.66	50.6
KXG30792	Sorghum	mitochondrion	49.66	50.43
CDX94544	Canola	mitochondrion	51.01	49.92
HORVU6Hr1G076750.17	Barley	mitochondrion	48.99	49.49
TraesCS6D01G290700.1	Wheat	mitochondrion	48.99	49.24
TraesCS6A01G311400.1	Wheat	mitochondrion, plastid	48.66	48.99
KRH36514	Soybean	cytosol	6.54	47.56
Os02t0740300-01	Rice	mitochondrion	47.82	46.64
CDY16678	Canola	cytosol	8.89	46.49
TraesCS6B01G341600.1	Wheat	cytosol, plastid	48.32	44.93
Solyc02g036340.2.1	Tomato	nucleus	26.85	42.44
CDX83073	Canola	endoplasmic reticulum	25.67	40.26
Bra029941.1-P	Field mustard	cytosol	13.59	39.51
KRH63149	Soybean	cytosol	8.39	36.23
Zm00001d007450_P001	Maize	cytosol	4.87	35.8
CDY71527	Canola	mitochondrion	14.93	33.84
CDX68520	Canola	cytosol	7.72	29.87
PGSC0003DMT400055267	Potato	mitochondrion	10.74	28.44
VIT_04s0023g01900.t01	Wine grape	plastid	16.78	15.95
VIT_16s0039g02110.t01	Wine grape	plasma membrane	16.61	15.69

Protein Annotations

Gene3D:1.10.8.60	EntrezGene:100255588	wikigene:100255588	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase
InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	ProteinID:CBI33002	ProteinID:CBI33002.3	ncoils:Coil	UniProt:D7TR79
EMBL:FN596012	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540
GO:GO:0009056	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0017025
GO:GO:0019538	GO:GO:0030433	GO:GO:0031595	GO:GO:0031597	GO:GO:0036402	GO:GO:0045899
GO:GO:1901800	EntrezGene:LOC100255588	wikigene:LOC100255588	InterPro:P-loop_NTPase	PFAM:PF00004	ScanProsite:PS00674
PANTHER:PTHR23073	PANTHER:PTHR23073:SF29	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0001BE3BC2	ArrayExpress:VIT_10s0116g00330
EnsemblPlantsGene:VIT_10s0116g00330	EnsemblPlants:VIT_10s0116g00330.t01	unigene:Vvi.7742	RefSeq:XP_002267342	RefSeq:XP_002267342.2	SEG:seg

Description

No Description!

Coordinates

chr10_random:-:140983..150797

Molecular Weight (calculated)

66267.3 Da

IEP (calculated)

7.582

GRAVY (calculated)

-0.379

Length

596 amino acids

Sequence
(BLAST)

001: MASVWRLLKA AQSWRPIVSP KTLTPPPLRF PPRFCHRPFE QQINPRISEA QLPPVSVSIV PSVLVGLFGF GLLEIAHAES DPGADKTPLP SQSSPSPSES
101: PPSYTNLEEN ARKLRDRLEE LIRTKGMKYG SYPRFTVALK GQKVTIKFQI PPTCEVPCLI AKLVAQLGMK VEERSGGSDM IMRAWDSGIA WQLMLSRLGK
201: QNKTGAEQVH SQYTNANEGD LCILIFQSLI SADKAEIEFI KQGSFSSEEL DALVSVLQFA GGRVEQNKTL ERRPRGDAPQ MHSAQKSIAS LEAMGVRVFG
301: ADEPQGGLSK NEVLWDNIAG YDQQKRQIED EIVFALHSPD VYDDVARGTR QKFESNRPRA VLFEGPPGTG KTSCARVIAN QAGVPLVYLP LESIMSKYYG
401: ESERLLGKVF VHANEFPEGA IVFLDEVDSF AVSRSREMHE ATRRILSVIL RQIDGFEQDK KVVVIAATNR KQDLDPALMS RFDSMITFGL PDNHDRQKIA
501: AQFAKHLTES ELVEFATATE GMSGRDIRDI CQQAERHWAS KVIRGQAPKD GDQVILPPIQ VYIESAKTRA NTLLSIADQK TEKSNRNQTQ PQLAFS

Best Arabidopsis Sequence Match ( AT4G04180.1 )
(BLAST)

001: MAILDKLFRA SRAWRGSLSH SKSMVPSQSP RARELRRCFH HGNFEQSNSK VNQVLRSCST LNDSPYFSMA PAVLGALFSV GVIGVAYAES DEANNDKSSA
101: PIDPNDETSS APIDPPPNYV DIAKKERARV EELIQSKGTQ YGSYPRFNVA VRGQKITLKF QVPSTCEVAQ LISNIGSQLG VKVSDRTGGS DMLLRAWDNP
201: VAWQITLRSV ENKKKLGESE DDSDDDLCIL IFGSLLTSDK VEVEFIKKGS LTTEELEAFV SALGVAGTKA GQNKGSGSRG STRDSSTDKS ISQLESMGVR
301: IYGVNKPLGD DSMDEISWDN IAGYDQQKRE IEDTILMALH SPEVYDDIVR GTRSKFESNR PRAVLFEGPP GTGKTSCARV IANQAGIPLL YVPLEAVMSK
401: YYGESERLLG AVFSQANELP DGAIIFLDEI DAFAISRDSE MHEATRRVLS VLLRQIDGFE QEKKVVVIAA TNRKQDLDPA LISRFDSMIM FDLPDLQTRQ
501: EIIAQYAKQL SKPELVQLAQ ATEAMSGRDI RDVCQGAERT WASKLIRRAK AGGEEQKITL PPIQEYLESA EARRKSLRSV TEQKEQKFAA RSKKPLLDFE

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G04180]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.