Factsheet for Solyc02g036340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 6
peroxisome 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400055267	Potato	mitochondrion	35.28	59.11
KRH63149	Soybean	cytosol	12.73	34.78
CDY71527	Canola	mitochondrion	20.69	29.66
VIT_10s0116g00330.t01	Wine grape	mitochondrion	42.44	26.85
KRH11495	Soybean	mitochondrion	37.93	24.96
Bra029485.1-P	Field mustard	mitochondrion	33.69	21.71
AT4G04180.1	Thale cress	mitochondrion	34.48	21.67
Os02t0740300-01	Rice	mitochondrion	34.75	21.44
CDX68520	Canola	cytosol	8.75	21.43
KXG30792	Sorghum	mitochondrion	33.16	21.29
TraesCS6A01G311400.1	Wheat	mitochondrion, plastid	32.89	20.95
TraesCS6D01G290700.1	Wheat	mitochondrion	32.63	20.74
CDX94544	Canola	mitochondrion	33.16	20.53
HORVU6Hr1G076750.17	Barley	mitochondrion	32.1	20.51
TraesCS6B01G341600.1	Wheat	cytosol, plastid	32.36	19.03
CDX83073	Canola	endoplasmic reticulum	18.83	18.68
GSMUA_Achr10P...	Banana	cytosol	18.57	17.63
Bra029941.1-P	Field mustard	cytosol	8.75	16.1
GSMUA_Achr7P19880_001	Banana	cytosol	14.59	14.47
KRH36514	Soybean	cytosol	2.39	10.98
Solyc03g097020.2.1	Tomato	nucleus	12.2	7.28
Solyc02g062700.2.1	Tomato	nucleus	10.34	6.09
VIT_10s0116g00260.t01	Wine grape	cytosol	2.92	4.38
Solyc02g036330.2.1	Tomato	cytosol	1.59	2.97
Zm00001d007450_P001	Maize	cytosol	0.53	2.47
CDY16678	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829
GO:GO:0006139	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0008540	GO:GO:0009056
GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0017025	GO:GO:0019538
GO:GO:0030433	GO:GO:0031595	GO:GO:0031597	GO:GO:0036402	GO:GO:0045899	GO:GO:1901800
UniProt:K4B5S7	PANTHER:PTHR23073	PANTHER:PTHR23073:SF29	EnsemblPlantsGene:Solyc02g036340.2	EnsemblPlants:Solyc02g036340.2.1	UniParc:UPI0002767735
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr2:-:30511460..30520346

Molecular Weight (calculated)

41529.2 Da

IEP (calculated)

9.606

GRAVY (calculated)

-0.215

Length

377 amino acids

Sequence
(BLAST)

001: MVSIRRLARA LHSHYRTLAS PSLHQSTNLP HNGIFGCKQR TYFSRSVPST TFPAILAGLL GVGVLNVAYA DSDEAGAEVP PFDSLPIPSY NPLEETAKRE
101: RLRLENLLKS KGVKYGSYPR FTVAVKGQKV TIKFQIPPTC EIPLLIATLV SRLGVKLEDP NAASNMLLRA WDSGVAWKLA LSRPQMKNGT AGEQAGGRDT
201: NPIDEDLCIL IFRPLINADK AEIEFMKPVT FTDEELDALA YVLQFAGQQK SLDLRSKGVP SADKIVTTLE SMGVKIFGIN VSTSGNPNAN IAWENIAGYN
301: QQKREIEDTI LLALQSPEVY DDIARGTRCK FETNRPRAVL FEGPPGVYAP KLKRKKLGGK WGQLEVYLQV LGSYARI

Best Arabidopsis Sequence Match ( AT4G04180.1 )
(BLAST)

001: MAILDKLFRA SRAWRGSLSH SKSMVPSQSP RARELRRCFH HGNFEQSNSK VNQVLRSCST LNDSPYFSMA PAVLGALFSV GVIGVAYAES DEANNDKSSA
101: PIDPNDETSS APIDPPPNYV DIAKKERARV EELIQSKGTQ YGSYPRFNVA VRGQKITLKF QVPSTCEVAQ LISNIGSQLG VKVSDRTGGS DMLLRAWDNP
201: VAWQITLRSV ENKKKLGESE DDSDDDLCIL IFGSLLTSDK VEVEFIKKGS LTTEELEAFV SALGVAGTKA GQNKGSGSRG STRDSSTDKS ISQLESMGVR
301: IYGVNKPLGD DSMDEISWDN IAGYDQQKRE IEDTILMALH SPEVYDDIVR GTRSKFESNR PRAVLFEGPP GTGKTSCARV IANQAGIPLL YVPLEAVMSK
401: YYGESERLLG AVFSQANELP DGAIIFLDEI DAFAISRDSE MHEATRRVLS VLLRQIDGFE QEKKVVVIAA TNRKQDLDPA LISRFDSMIM FDLPDLQTRQ
501: EIIAQYAKQL SKPELVQLAQ ATEAMSGRDI RDVCQGAERT WASKLIRRAK AGGEEQKITL PPIQEYLESA EARRKSLRSV TEQKEQKFAA RSKKPLLDFE

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G04180]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.