CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029941.1-P	Field mustard	cytosol	32.37	60.0
CDX68520	Canola	cytosol	18.42	45.45
CDY71527	Canola	mitochondrion	30.53	44.11
KRH36514	Soybean	cytosol	7.89	36.59
CDX94544	Canola	mitochondrion	58.16	36.29
Solyc02g036330.2.1	Tomato	cytosol	18.68	35.15
VIT_10s0116g00260.t01	Wine grape	cytosol	22.63	34.26
KRH11495	Soybean	mitochondrion	44.47	29.49
PGSC0003DMT400055268	Potato	cytosol	25.53	27.79
GSMUA_Achr10P...	Banana	cytosol	28.95	27.71
KXG30792	Sorghum	mitochondrion	41.32	26.75
HORVU6Hr1G076750.17	Barley	mitochondrion	40.26	25.93
VIT_10s0116g00330.t01	Wine grape	mitochondrion	40.26	25.67
TraesCS6D01G290700.1	Wheat	mitochondrion	39.74	25.46
KRH63149	Soybean	cytosol	9.21	25.36
TraesCS6A01G311400.1	Wheat	mitochondrion, plastid	39.47	25.34
Os02t0740300-01	Rice	mitochondrion	40.26	25.04
GSMUA_Achr7P19880_001	Banana	cytosol	25.0	25.0
TraesCS6B01G341600.1	Wheat	cytosol, plastid	40.26	23.87
Solyc02g036340.2.1	Tomato	nucleus	18.68	18.83
PGSC0003DMT400055267	Potato	mitochondrion	8.68	14.67
CDY23468	Canola	cytosol	9.21	9.16
CDY43155	Canola	plastid	13.95	9.14
CDY36475	Canola	plastid	15.0	9.05
CDY16967	Canola	cytosol	9.21	9.04
CDY28733	Canola	plastid	14.74	8.92
CDY64607	Canola	plastid	13.95	8.88
CDX69234	Canola	cytosol, plastid	13.95	8.86
CDY29229	Canola	mitochondrion	8.42	8.72
CDY38078	Canola	plastid	14.21	8.67
CDY30315	Canola	plastid	15.0	8.61
CDY49920	Canola	plastid	14.47	8.61
CDX69409	Canola	plastid	13.68	8.12
CDY23469	Canola	plastid	3.68	8.09
CDX85480	Canola	plastid	13.16	8.06
CDY51218	Canola	plastid	15.0	7.95
CDX68521	Canola	mitochondrion	2.63	6.9
CDY16968	Canola	cytosol, extracellular, plastid	3.16	5.11
CDX96098	Canola	mitochondrion	2.89	4.62
CDY16678	Canola	cytosol	1.32	4.39
CDY16679	Canola	mitochondrion	2.11	4.1

Protein Annotations

EnsemblPlants:CDX83073	EnsemblPlantsGene:GSBRNA2T00138567001	Gene3D:3.40.50.300	GO:A0A078D776	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR23073
PANTHER:PTHR23073:SF29	PFAM:PF00004	ProteinID:CDX83073	ProteinID:CDX83073.1	ScanProsite:PS00674	SEG:seg
SignalP:SignalP-noTM	SUPFAM:SSF52540	UniParc:UPI0004EE3837	MapMan:35.2	:	:

Description

BnaA01g20730D

Coordinates

chrLK031831:-:1335149..1337410

Molecular Weight (calculated)

42562.0 Da

IEP (calculated)

5.176

GRAVY (calculated)

-0.129

Length

380 amino acids

Sequence
(BLAST)

001: MNSSTMIRLS YFFGALFSVG VAYADPDEVL SHTTSVYNLI LMQANGKSSV LTNPPPNYAD IARKEGTRIQ EPIQSKGSQY CSCPRFNVSI RGQKITLKFK
101: VPSSCEVPQL IANIGSHWWF RHDIAFLGQA TETLLLSCYP SPVAWQITLR SAEKKKEPGA SEDESDEDLC ILIFGSLLHS DKVEVEFIKK ESLTTEELEA
201: FVSALQVAGQ NVDEIRQVEV EVVEINLKQT DPDLCCLRAH QELERHLVRV IANQADIPLL YVPLEAVMSK YYGESERLLG AVFSQANEIS DGAIIFLDEI
301: AAFSISHDSE MHEEKHRVLY VLLRQIDGFE QDKKVVVIAA TNRKQDLDPA LISRFESMIM VGLANPSRNH RPVCKTTLKA

Best Arabidopsis Sequence Match ( AT4G04180.1 )
(BLAST)

001: MAILDKLFRA SRAWRGSLSH SKSMVPSQSP RARELRRCFH HGNFEQSNSK VNQVLRSCST LNDSPYFSMA PAVLGALFSV GVIGVAYAES DEANNDKSSA
101: PIDPNDETSS APIDPPPNYV DIAKKERARV EELIQSKGTQ YGSYPRFNVA VRGQKITLKF QVPSTCEVAQ LISNIGSQLG VKVSDRTGGS DMLLRAWDNP
201: VAWQITLRSV ENKKKLGESE DDSDDDLCIL IFGSLLTSDK VEVEFIKKGS LTTEELEAFV SALGVAGTKA GQNKGSGSRG STRDSSTDKS ISQLESMGVR
301: IYGVNKPLGD DSMDEISWDN IAGYDQQKRE IEDTILMALH SPEVYDDIVR GTRSKFESNR PRAVLFEGPP GTGKTSCARV IANQAGIPLL YVPLEAVMSK
401: YYGESERLLG AVFSQANELP DGAIIFLDEI DAFAISRDSE MHEATRRVLS VLLRQIDGFE QEKKVVVIAA TNRKQDLDPA LISRFDSMIM FDLPDLQTRQ
501: EIIAQYAKQL SKPELVQLAQ ATEAMSGRDI RDVCQGAERT WASKLIRRAK AGGEEQKITL PPIQEYLESA EARRKSLRSV TEQKEQKFAA RSKKPLLDFE

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G04180]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.