CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY23468	Canola	cytosol	58.22	97.38
CDY43155	Canola	plastid	80.28	88.45
AT3G03060.1	Thale cress	plastid	86.54	88.06
CDY28733	Canola	plastid	86.39	87.9
CDY23469	Canola	plastid	23.79	87.86
CDY16967	Canola	cytosol	53.05	87.6
CDX69409	Canola	plastid	80.44	80.31
VIT_16s0039g02110.t01	Wine grape	plasma membrane	78.09	79.08
CDX85480	Canola	plastid	75.74	78.06
CDY38078	Canola	plastid	75.9	77.85
KRH24032	Soybean	mitochondrion, nucleus	74.96	77.63
KRH29004	Soybean	nucleus	74.8	77.1
Solyc03g097020.2.1	Tomato	nucleus	75.59	76.42
HORVU0Hr1G016640.4	Barley	cytosol, nucleus, peroxisome	59.31	74.31
TraesCS6B01G294300.1	Wheat	peroxisome	61.82	73.97
GSMUA_Achr4P17050_001	Banana	vacuole	70.11	73.32
HORVU0Hr1G032110.1	Barley	cytosol, nucleus	64.16	70.93
CDY16968	Canola	cytosol, extracellular, plastid	25.04	68.09
TraesCS6D01G247700.1	Wheat	peroxisome, plastid	66.82	67.14
TraesCS6A01G266900.1	Wheat	peroxisome, plastid	66.67	66.98
Os02t0697600-01	Rice	mitochondrion	66.98	66.88
HORVU6Hr1G067630.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole	65.57	65.98
EES07415	Sorghum	plastid	66.67	65.64
Zm00001d017707_P003	Maize	plastid	65.1	64.6
Zm00001d051535_P001	Maize	plastid	65.41	63.91
CDY64607	Canola	plastid	58.84	62.98
CDY36475	Canola	plastid	61.5	62.38
CDX69234	Canola	cytosol, plastid	58.06	62.04
PGSC0003DMT400008177	Potato	cytosol	10.17	61.32
CDY30315	Canola	plastid	60.41	58.31
CDY51218	Canola	plastid	60.25	53.7
CDY29229	Canola	mitochondrion	28.64	49.86
CDX96098	Canola	mitochondrion	17.06	45.8
CDX68520	Canola	cytosol	4.85	20.13
CDX94544	Canola	mitochondrion	16.43	17.24
CDY16678	Canola	cytosol	2.97	16.67
CDX83073	Canola	endoplasmic reticulum	8.61	14.47
CDY16679	Canola	mitochondrion	4.23	13.85
CDY71527	Canola	mitochondrion	5.32	12.93
CDX68521	Canola	mitochondrion	2.82	12.41

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.2	GO:A0A078IG82	UniProt:A0A078IG82	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_core
EnsemblPlants:CDY49920	ProteinID:CDY49920	ProteinID:CDY49920.1	ncoils:Coil	InterPro:DUF3523	GO:GO:0000166
GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043
EnsemblPlantsGene:GSBRNA2T00094086001	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF12037	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3
SMART:SM00382	SUPFAM:SSF52540	SignalP:SignalP-noTM	UniParc:UPI0004EDDD2A	SEG:seg	:

Description

BnaCnng18300DBnaCnng18300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG82]

Coordinates

chrLK032869:+:5076..7937

Molecular Weight (calculated)

70653.7 Da

IEP (calculated)

9.752

GRAVY (calculated)

-0.587

Length

639 amino acids

Sequence
(BLAST)

001: MAQKCAIGLI TAVAASVSLS QSKVASADGP FTFPAANPQQ QAASSPPSTA GEESSAPPPR ARNDNPRTSS GGFDPEALER GAKALKEINN SSYAKNVFES
101: IKQQEETKQT EFAAKAQEYK AMQAQAETER QKVIYDEHKK LAQHQAQTKS QMARYEDDLA RKRMQARNFI HTFTTFRASF LHSNCPTRNQ ELVKMQEDSA
201: IRQEQARRAT EEQIQAQRRQ TEREKAEIER ETIKVKAIAE AEGRAHEARL AEDVNRRMLV DRANAEREKW VAAINTTFDH IGGGLRAILT DQNKLIVAVG
301: GATALAAGIY TTREGAKVIW SYVDRILGQP SLIRESSRGK YPWSGSVSRV MSTLRGKGSA TNNGKGFGDV ILHPSLQKRI EHLANATANT KSHQAPFRNM
401: LFYGPPGTGK TMAARELARK SGLDYALMTG GDVAPLGSQA VTKIHQLFDW GKKSKRGLLL FIDEADAFLC ERNKTYMSEA QRSALNALLF RTGDQSKDIV
501: LALATNRPGD LDSAVADRVD EVLEFPLPGE EERFKLLSLY LEKYIAQAGP RKPGLFDRLF KKEQQKIEIK GVTEELLKEA AAKTEGFSGR EIAKLMASVQ
601: AAVYGSEDCV LDSALFREVV DYKVAEHQQR RKLAGTDSK

Best Arabidopsis Sequence Match ( AT3G03060.1 )
(BLAST)

001: MAQKCAIGLI SALAASASLA KSKVASADGP FNLSGFSTSA NPQQQASPPP PSLAGEESSA PPRARNDNPR TSSGGFDPEA LERGAKALKE INHSSYAKKV
101: FESIKQQEET KQTEFATKAQ EFKAMQAQAE TERHKVIYDE QKKLAQHQAQ TKSQMARYED DLARKRMQAE NEFHRTRNQE LVKMQEDSAI RQEQARRATE
201: EQIQAQRRQT EREKAEIERE TIRVKAIAEA EGRAHEARLA EDVNRRMLVD RANAEREKWV AAINTTFDHI GGGLRAILTD QNKLIVAVGG VTALAAGIYT
301: TREGAKVIWS YVDRILGQPS LIRESSRGKY PWSGSLSRVM STLRGKESAS KNGKRFGDVI LHPPLAKRIE HLATSTANTK LHQAPFRNIL LHGPPGTGKT
401: MAARELARKS GLDYALMTGG DVAPLGAQAV TKIHELFDWG KKSKRGLLLF IDEADAFLCE RNKTYMSEAQ RSALNALLFR TGDQSKDIVL ALATNRPGDL
501: DSAVADRVDE VLEFPLPGEE ERFKLLNLYL EKYIAEAGPS KPGLFDRLFK KEQQKIEIKG VTEELLKEAA AKTEGFSGRE IAKLMASVQA AVYGSEDCVL
601: DSMLFREVVD YKVAEHQQRR KLAGVDSK

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WVF7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.