Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
nucleus: 28499913 |
msms PMID:
21132161
doi
Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH24032 | Soybean | mitochondrion, nucleus | 92.9 | 93.35 |
| CDY23468 | Canola | cytosol | 52.26 | 84.82 |
| VIT_16s0039g02110.t01 | Wine grape | plasma membrane | 82.58 | 81.14 |
| CDY16967 | Canola | cytosol | 50.48 | 80.88 |
| Solyc03g097020.2.1 | Tomato | nucleus | 79.68 | 78.16 |
| CDY43155 | Canola | plastid | 72.26 | 77.24 |
| Bra032021.1-P | Field mustard | plastid | 72.26 | 77.24 |
| Bra021376.1-P | Field mustard | plastid | 73.23 | 76.95 |
| AT3G03060.1 | Thale cress | plastid | 77.58 | 76.59 |
| CDY28733 | Canola | plastid | 77.26 | 76.27 |
| GSMUA_Achr4P17050_001 | Banana | vacuole | 74.68 | 75.78 |
| TraesCS6B01G294300.1 | Wheat | peroxisome | 64.68 | 75.09 |
| CDY49920 | Canola | plastid | 77.1 | 74.8 |
| HORVU0Hr1G016640.4 | Barley | cytosol, nucleus, peroxisome | 61.29 | 74.51 |
| CDX69409 | Canola | plastid | 75.97 | 73.59 |
| Bra008582.1-P | Field mustard | plastid | 68.06 | 72.38 |
| AT5G16930.1 | Thale cress | plastid | 75.16 | 72.36 |
| HORVU0Hr1G032110.1 | Barley | cytosol, nucleus | 66.77 | 71.63 |
| CDX85480 | Canola | plastid | 71.13 | 71.13 |
| CDY38078 | Canola | plastid | 70.32 | 69.98 |
| Bra023590.1-P | Field mustard | plastid | 71.45 | 69.87 |
| Os02t0697600-01 | Rice | mitochondrion | 71.13 | 68.91 |
| TraesCS6A01G266900.1 | Wheat | peroxisome, plastid | 69.19 | 67.45 |
| TraesCS6D01G247700.1 | Wheat | peroxisome, plastid | 69.03 | 67.3 |
| EES07415 | Sorghum | plastid | 70.16 | 67.03 |
| Zm00001d017707_P003 | Maize | plastid | 68.71 | 66.15 |
| HORVU6Hr1G067630.1 | Barley | endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, plastid, vacuole | 67.74 | 66.14 |
| Zm00001d051535_P001 | Maize | plastid | 68.87 | 65.29 |
| KRH28685 | Soybean | nucleus | 64.19 | 63.07 |
| KRH76781 | Soybean | nucleus | 63.55 | 62.94 |
| PGSC0003DMT400008177 | Potato | cytosol | 10.65 | 62.26 |
| CDY16968 | Canola | cytosol, extracellular, plastid | 21.61 | 57.02 |
| CDY23469 | Canola | plastid | 15.65 | 56.07 |
| KRH36514 | Soybean | cytosol | 3.23 | 24.39 |
| KRH11495 | Soybean | mitochondrion | 15.81 | 17.1 |
| KRH63149 | Soybean | cytosol | 3.55 | 15.94 |
Protein Annotations
| EntrezGene:100790915 | Gene3D:3.40.50.300 | MapMan:35.2 | InterPro:AAA+_ATPase | EMBL:ACUP02006776 | InterPro:ATPase_AAA_core |
| ncoils:Coil | InterPro:DUF3523 | EnsemblPlantsGene:GLYMA_11G091700 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0007005 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | UniProt:I1LIH4 | EnsemblPlants:KRH29004 |
| ProteinID:KRH29004 | ProteinID:KRH29004.1 | InterPro:P-loop_NTPase | PFAM:PF00004 | PFAM:PF12037 | PANTHER:PTHR23075 |
| PANTHER:PTHR23075:SF3 | SMART:SM00382 | SUPFAM:SSF52540 | SignalP:SignalP-noTM | UniParc:UPI000233D706 | SEG:seg |
Description
hypothetical protein
Coordinates
chr11:+:6938010..6942238
Molecular Weight (calculated)
68741.9 Da
IEP (calculated)
9.788
GRAVY (calculated)
-0.587
Length
620 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKTYAAGLL SAIAAATAAA SLNQNNAYAD GILPPNPSEI EPSPAPPPPK VRNDHPRTTS AGFDPEALER GVKALREISK SPHGKKVFEV IKKQEETKQT
101: ELSAKVAEFR QMKAQHETER QRIIYDEQKK LAQHQAQTKS QMAKYEDELA RKRMQAENEY HRARNQELVK LQEESSIRQE QARRATEEQI QAQRRQTERE
201: KAEIERETIR VRAMAEAEGR AHEAKLAEDV NRRMLVDRAN AEREKWVAAI NTTFEHIGGG LRAILTDQNK LVVAVGGVTA LAAGVYTTRE GARVIWGYID
301: RILGQPSLIR ESSRGKYPWS GMFSRTMSSL SRHTNPGSAL KNGNGFGDVI LHPSLQKRIQ QLSSATANTK AHQAPFRNML FYGPPGTGKT MAARELARKS
401: GLDYALMTGG DVAPLGPQAV TKIHQLFDWA KKSNKGLLLF IDEADAFLCE RNKTYMSEAQ RSALNALLSR TGDQSKDIVL ALATNRPGDL DSAVTDRIDE
501: VLEFPLPGEE ERFKLLKLYL DKYIAQAGSG KSSFVKDLFK GKPQQIEIKG LTDDIIKEAA AKTEGFSGRE IAKLMASVQA AVYGSENCVL DPSLFREVVD
601: YKVAEHQQRI KLAAGDKPIA
101: ELSAKVAEFR QMKAQHETER QRIIYDEQKK LAQHQAQTKS QMAKYEDELA RKRMQAENEY HRARNQELVK LQEESSIRQE QARRATEEQI QAQRRQTERE
201: KAEIERETIR VRAMAEAEGR AHEAKLAEDV NRRMLVDRAN AEREKWVAAI NTTFEHIGGG LRAILTDQNK LVVAVGGVTA LAAGVYTTRE GARVIWGYID
301: RILGQPSLIR ESSRGKYPWS GMFSRTMSSL SRHTNPGSAL KNGNGFGDVI LHPSLQKRIQ QLSSATANTK AHQAPFRNML FYGPPGTGKT MAARELARKS
401: GLDYALMTGG DVAPLGPQAV TKIHQLFDWA KKSNKGLLLF IDEADAFLCE RNKTYMSEAQ RSALNALLSR TGDQSKDIVL ALATNRPGDL DSAVTDRIDE
501: VLEFPLPGEE ERFKLLKLYL DKYIAQAGSG KSSFVKDLFK GKPQQIEIKG LTDDIIKEAA AKTEGFSGRE IAKLMASVQA AVYGSENCVL DPSLFREVVD
601: YKVAEHQQRI KLAAGDKPIA
001: MAQKCAIGLI SALAASASLA KSKVASADGP FNLSGFSTSA NPQQQASPPP PSLAGEESSA PPRARNDNPR TSSGGFDPEA LERGAKALKE INHSSYAKKV
101: FESIKQQEET KQTEFATKAQ EFKAMQAQAE TERHKVIYDE QKKLAQHQAQ TKSQMARYED DLARKRMQAE NEFHRTRNQE LVKMQEDSAI RQEQARRATE
201: EQIQAQRRQT EREKAEIERE TIRVKAIAEA EGRAHEARLA EDVNRRMLVD RANAEREKWV AAINTTFDHI GGGLRAILTD QNKLIVAVGG VTALAAGIYT
301: TREGAKVIWS YVDRILGQPS LIRESSRGKY PWSGSLSRVM STLRGKESAS KNGKRFGDVI LHPPLAKRIE HLATSTANTK LHQAPFRNIL LHGPPGTGKT
401: MAARELARKS GLDYALMTGG DVAPLGAQAV TKIHELFDWG KKSKRGLLLF IDEADAFLCE RNKTYMSEAQ RSALNALLFR TGDQSKDIVL ALATNRPGDL
501: DSAVADRVDE VLEFPLPGEE ERFKLLNLYL EKYIAEAGPS KPGLFDRLFK KEQQKIEIKG VTEELLKEAA AKTEGFSGRE IAKLMASVQA AVYGSEDCVL
601: DSMLFREVVD YKVAEHQQRR KLAGVDSK
101: FESIKQQEET KQTEFATKAQ EFKAMQAQAE TERHKVIYDE QKKLAQHQAQ TKSQMARYED DLARKRMQAE NEFHRTRNQE LVKMQEDSAI RQEQARRATE
201: EQIQAQRRQT EREKAEIERE TIRVKAIAEA EGRAHEARLA EDVNRRMLVD RANAEREKWV AAINTTFDHI GGGLRAILTD QNKLIVAVGG VTALAAGIYT
301: TREGAKVIWS YVDRILGQPS LIRESSRGKY PWSGSLSRVM STLRGKESAS KNGKRFGDVI LHPPLAKRIE HLATSTANTK LHQAPFRNIL LHGPPGTGKT
401: MAARELARKS GLDYALMTGG DVAPLGAQAV TKIHELFDWG KKSKRGLLLF IDEADAFLCE RNKTYMSEAQ RSALNALLFR TGDQSKDIVL ALATNRPGDL
501: DSAVADRVDE VLEFPLPGEE ERFKLLNLYL EKYIAEAGPS KPGLFDRLFK KEQQKIEIKG VTEELLKEAA AKTEGFSGRE IAKLMASVQA AVYGSEDCVL
601: DSMLFREVVD YKVAEHQQRR KLAGVDSK
Arabidopsis Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WVF7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.