CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76781	Soybean	nucleus	95.4	96.17
PGSC0003DMT400040085	Potato	extracellular	44.53	78.93
VIT_04s0023g01900.t01	Wine grape	plastid	77.65	78.15
CDY36475	Canola	plastid	75.75	75.87
Solyc02g062700.2.1	Tomato	nucleus	75.12	74.06
AT2G18330.1	Thale cress	plastid	74.33	73.74
AT4G36580.1	Thale cress	plastid	73.69	73.58
CDX69234	Canola	cytosol, plastid	67.83	71.57
CDY64607	Canola	plastid	67.67	71.52
Bra011692.1-P	Field mustard	plastid	67.67	71.29
CDY30315	Canola	plastid	73.85	70.39
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane	69.89	70.11
Zm00001d051572_P001	Maize	mitochondrion	63.55	66.28
EES07394	Sorghum	mitochondrion	62.76	65.45
CDY51218	Canola	plastid	73.53	64.71
Os02t0706500-01	Rice	mitochondrion	62.92	64.45
TraesCS6D01G253600.1	Wheat	mitochondrion	62.28	64.43
Bra037225.1-P	Field mustard	plastid	73.53	64.27
KRH29004	Soybean	nucleus	63.07	64.19
Zm00001d017783_P002	Maize	mitochondrion	62.6	63.81
TraesCS6B01G300900.1	Wheat	mitochondrion	61.49	63.61
TraesCS6A01G273800.1	Wheat	mitochondrion	61.17	63.38
KRH24032	Soybean	mitochondrion, nucleus	61.81	63.21
HORVU6Hr1G069110.2	Barley	plastid	57.21	56.32
KRH36514	Soybean	cytosol	3.01	23.17
KRH11495	Soybean	mitochondrion	15.85	17.45
KRH63149	Soybean	cytosol	3.33	15.22

Protein Annotations

EntrezGene:100777755	Gene3D:3.40.50.300	MapMan:35.2	InterPro:AAA+_ATPase	EMBL:ACUP02006760	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	ncoils:Coil	InterPro:DUF3523	EnsemblPlantsGene:GLYMA_11G069000	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	UniProt:I1LHT2
EnsemblPlants:KRH28685	ProteinID:KRH28685	ProteinID:KRH28685.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF12037
ScanProsite:PS00674	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI000233D6B7
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:-:5182663..5188835

Molecular Weight (calculated)

70820.3 Da

IEP (calculated)

8.530

GRAVY (calculated)

-0.632

Length

631 amino acids

Sequence
(BLAST)

001: MAASKLTSCV AVTSAAVVSM SAFSDRAYAD SYFRLPFFSS KPSNEPSPPN QTSDSKSEPP PPDEPNKSGG FDPESLERGA KALREINSSP YSKQLFDLMR
101: KQEETRLAEL DAEKVHYELI QSQGDIERQR KMAEEQRNLI QDQAQRQAQV LRYEDELARK RMQTDHEAQR QHNVELVKMQ EQSSFRKEQA RQATEEQIQS
201: QQRQTERERA EIERETIRVK AMAEAEGRAH EAKLTEDHNR RMLIERMQGE RDKWLAAINT TFSHIEGGLR ALLTDRDKLL MTVGGATALA AGIYTTREGS
301: KVTWGYINRI LGQPSLIRES SMAKFPGSEI ISQAKNKVLC NSTLAGAEKP IGSKNGLGNV ILHPSLQRRI EHLARATSNT KSHQAPFRNM LFYGPPGTGK
401: TMVAKELARR SGLHYAMMTG GDVAPLGAQA VTKIHDIFDW AKKSRKGLLL FIDEADAFLC ERNSSHMSEA QRSALNALLF RTGDQSRDIV LVLATNRPGD
501: LDSAVTDRID EVIEFPLPGE EERLKLLKLY LNKYLCDDNN GSKGGFFLKK QPQKITIKDL SEDVFREAAK KTEGFSGREI AKLMASVQAA VYGRPDCILD
601: AQLFREIVDY KVVEHHQRLK LAAEGGQPCQ I

Best Arabidopsis Sequence Match ( AT2G18330.1 )
(BLAST)

001: MAASRLCSAA AIAAAFTSMS MSQNRAYADS RFRFPFFSSS PPAEESPTDH KSSSNSKSET KPDSDEPKGS GFDPESLERG AKALREINSS PHSKQVFDLM
101: RKQEKTRLAE LAAEKEHNEA IQASKDIERQ RKLAEDQRNL VQQQAQAKAQ NLRYEDELAR KRMQTDNEAQ RRHNAELVSM QEASSIRKEK ARIATEEQIQ
201: AQQRETEKER AELERETIRV KAMAEAEGRA HEAKLTEEQN RRMLLDKING EREKWLAAIN TTFSHIEGGV RTLLTDRSKL IMTVGGVTAL AAGVYTTREG
301: ARVTWGYINR ILGQPSLIRE SSMGRFPWAG SVSQFKNKLS TAAGAAASAE GEKPLENVIL HRSLKTRIER LARATANTKS HKAPFRNMMF YGPPGTGKTM
401: VAREIARKSG LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR SALNALLFRT GDQSRDIVLV LATNRPGDLD
501: SAVTDRIDEV IEFPLPGEEE RFKLLKLYLN KYLMGDDKKG EKDSNLKWSN LFKKKKSQKI TIEGDLTDQV IKEAAKKTEG FSGREIAKLV AGVQAAVYGR
601: QDCVLDSQLF EEIVDYKIEE HHQRIRLATE GGQSFP

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.