Factsheet for PGSC0003DMT400040085

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 4
cytosol 2
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 28961394

msms PMID: 28961394 doi

E Elagamey, A Sinha, K Narula, MAE Abdellatef, N Chakraborty, S Chakraborty

National Institute of Plant Genome Research, New Delhi, India., Plant Pathology Research Institute, Agricultural Research Center (ARC), Giza, Egypt.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g062700.2.1	Tomato	nucleus	97.75	54.38
PGSC0003DMT400008177	Potato	cytosol	15.45	51.89
VIT_04s0023g01900.t01	Wine grape	plastid	81.74	46.41
CDY36475	Canola	plastid	80.62	45.56
CDX69234	Canola	cytosol, plastid	75.84	45.15
AT2G18330.1	Thale cress	plastid	80.34	44.97
CDY64607	Canola	plastid	75.28	44.89
Bra011692.1-P	Field mustard	plastid	75.28	44.74
KRH28685	Soybean	nucleus	78.93	44.53
KRH76781	Soybean	nucleus	77.53	44.09
AT4G36580.1	Thale cress	plastid	77.81	43.83
CDY30315	Canola	plastid	81.46	43.81
EES07394	Sorghum	mitochondrion	73.03	42.98
Zm00001d051572_P001	Maize	mitochondrion	73.03	42.98
TraesCS6D01G253600.1	Wheat	mitochondrion	72.75	42.46
Os02t0706500-01	Rice	mitochondrion	73.31	42.37
TraesCS6A01G273800.1	Wheat	mitochondrion	72.19	42.2
TraesCS6B01G300900.1	Wheat	mitochondrion	72.19	42.13
Zm00001d017783_P002	Maize	mitochondrion	71.91	41.36
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane	72.47	41.02
HORVU6Hr1G069110.2	Barley	plastid	71.91	39.94
Bra037225.1-P	Field mustard	plastid	80.62	39.75
CDY51218	Canola	plastid	80.06	39.75
PGSC0003DMT400055268	Potato	cytosol	21.35	21.78
PGSC0003DMT400008178	Potato	cytosol, mitochondrion, peroxisome	2.25	6.96
PGSC0003DMT400055267	Potato	mitochondrion	2.81	4.44

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS	InterPro:ATPase_AAA_core	InterPro:DUF3523
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0007005	GO:GO:0008150	GO:GO:0009987
GO:GO:0016043	UniProt:M1B997	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF12037	EnsemblPlantsGene:PGSC0003DMG400015506
PGSC:PGSC0003DMG400015506	EnsemblPlants:PGSC0003DMT400040085	ScanProsite:PS00674	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI000296DDD5	:	:	:	:

Description

Protein MSP1 [Source:PGSC_GENE;Acc:PGSC0003DMG400015506]

Coordinates

chr2:+:20968347..20976326

Molecular Weight (calculated)

39167.7 Da

IEP (calculated)

9.168

GRAVY (calculated)

-0.321

Length

356 amino acids

Sequence
(BLAST)

001: MTVGGVTALA AGVYTTREGA RVTWGYINRI LGQPSLIRES SMSRFPWSGM ISQVANKGLK FGTAAGSSAT GQSKSAFGNI ILHPSLQRRI EHLARATANT
101: KSHQAPFRNM LFYGPPGTGK TMVAREIARK SGLDYAMMTG GDVAPLGAQA VTKIHEIFDW AKKSKKGLLL FIDEADAFLC ERNSTYMSEA QRSALNALLF
201: RTGDQSRDVV LVLATNRPGD LDSAVTDRID EVIEFPLPQE DERFQLLKLY LNKYLAGEDD SDSNSKWGHL FKKSPQRITI KDLSDDVIRE AAKKTEGFSG
301: REIAKLVASV QATVYGSPDC VLDSQLFKEI VDYKVAEHHQ RIKLTAEGIE PTYQGN

Best Arabidopsis Sequence Match ( AT2G18330.1 )
(BLAST)

001: MAASRLCSAA AIAAAFTSMS MSQNRAYADS RFRFPFFSSS PPAEESPTDH KSSSNSKSET KPDSDEPKGS GFDPESLERG AKALREINSS PHSKQVFDLM
101: RKQEKTRLAE LAAEKEHNEA IQASKDIERQ RKLAEDQRNL VQQQAQAKAQ NLRYEDELAR KRMQTDNEAQ RRHNAELVSM QEASSIRKEK ARIATEEQIQ
201: AQQRETEKER AELERETIRV KAMAEAEGRA HEAKLTEEQN RRMLLDKING EREKWLAAIN TTFSHIEGGV RTLLTDRSKL IMTVGGVTAL AAGVYTTREG
301: ARVTWGYINR ILGQPSLIRE SSMGRFPWAG SVSQFKNKLS TAAGAAASAE GEKPLENVIL HRSLKTRIER LARATANTKS HKAPFRNMMF YGPPGTGKTM
401: VAREIARKSG LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR SALNALLFRT GDQSRDIVLV LATNRPGDLD
501: SAVTDRIDEV IEFPLPGEEE RFKLLKLYLN KYLMGDDKKG EKDSNLKWSN LFKKKKSQKI TIEGDLTDQV IKEAAKKTEG FSGREIAKLV AGVQAAVYGR
601: QDCVLDSQLF EEIVDYKIEE HHQRIRLATE GGQSFP

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.