CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
nucleus 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28685	Soybean	nucleus	96.17	95.4
PGSC0003DMT400040085	Potato	extracellular	44.09	77.53
VIT_04s0023g01900.t01	Wine grape	plastid	77.32	77.19
CDY36475	Canola	plastid	75.72	75.24
Solyc02g062700.2.1	Tomato	nucleus	75.24	73.59
AT4G36580.1	Thale cress	plastid	73.32	72.63
AT2G18330.1	Thale cress	plastid	73.64	72.48
CDX69234	Canola	cytosol, plastid	67.73	70.9
Bra011692.1-P	Field mustard	plastid	67.73	70.78
CDY64607	Canola	plastid	67.41	70.69
CDY30315	Canola	plastid	74.12	70.09
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane	69.97	69.63
Zm00001d051572_P001	Maize	mitochondrion	63.42	65.62
CDY51218	Canola	plastid	74.28	64.85
EES07394	Sorghum	mitochondrion	62.46	64.63
Bra037225.1-P	Field mustard	plastid	74.28	64.4
TraesCS6D01G253600.1	Wheat	mitochondrion	62.3	63.93
Os02t0706500-01	Rice	mitochondrion	62.78	63.8
KRH29004	Soybean	nucleus	62.94	63.55
Zm00001d017783_P002	Maize	mitochondrion	62.46	63.17
TraesCS6B01G300900.1	Wheat	mitochondrion	61.5	63.11
TraesCS6A01G273800.1	Wheat	mitochondrion	61.18	62.89
KRH24032	Soybean	mitochondrion, nucleus	61.66	62.56
HORVU6Hr1G069110.2	Barley	plastid	57.83	56.47
KRH36514	Soybean	cytosol	2.88	21.95
KRH11495	Soybean	mitochondrion	15.97	17.45
KRH63149	Soybean	cytosol	3.19	14.49

Protein Annotations

EntrezGene:100776095	Gene3D:3.40.50.300	MapMan:35.2	InterPro:AAA+_ATPase	EMBL:ACUP02000642	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	ncoils:Coil	InterPro:DUF3523	EnsemblPlantsGene:GLYMA_01G174000	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0007005	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	UniProt:I1J8U6
EnsemblPlants:KRH76781	ProteinID:KRH76781	ProteinID:KRH76781.1	InterPro:P-loop_NTPase	PFAM:PF00004	PFAM:PF12037
ScanProsite:PS00674	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI00023375D0
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:51095403..51101297

Molecular Weight (calculated)

70387.5 Da

IEP (calculated)

8.303

GRAVY (calculated)

-0.645

Length

626 amino acids

Sequence
(BLAST)

001: MAASRLTSCV AVTSAAVVSM STFSDRAYAD SYFRLPFFSS KSSSEPSPPN QPSDSNSEPP PPDEPNKSGF DPESLERGAK ALREINSSPY SKQLFDLMRK
101: QEETRLAELD AEKVHYELIQ SQGDIERQRK MAEEQRNLIQ DQAQRQAQVL RYEDELARKR LQTDHEAQRQ HNVELVKMQE QSSFRKEQAR QATEEQIQSQ
201: QRQTERERAE IERETIRVKA MAEAEGRAHE AKLTEDHNRR MLIERMQGER DKWLAAINTT FSHIEGGLRA LLTDRDKLLM TVGGATALAA GIYMTREGSK
301: VTWGYINRIL GQPSLIRESS MAKFPGSKII SQAKNKVLHD STLAGAEKPI GSKNGLGNVI LHPSLQRRIE HLARATSNTK SHQAPFRNML FYGSPGTGKT
401: MVAREIARRS GLDYAMMTGG DVAPLGAQAV TKIHDIFDWS KKSRKGLLLF IDEADAFLCE RNSSHMSEAQ RSALNALLFR TGDQSRDIVL VLATNRPGDL
501: DSAVTDRIDE VIEFPLPGEE ERLKLLKLYL NKYLCDDNNG SKGGFFLKKQ PQKISIKDLS EDVFREAATK TEGFSGREIA KLMASVQAAV YGRPDCILDS
601: QLFRESIDYK VVEHHQRLKL AADGQI

Best Arabidopsis Sequence Match ( AT2G18330.1 )
(BLAST)

001: MAASRLCSAA AIAAAFTSMS MSQNRAYADS RFRFPFFSSS PPAEESPTDH KSSSNSKSET KPDSDEPKGS GFDPESLERG AKALREINSS PHSKQVFDLM
101: RKQEKTRLAE LAAEKEHNEA IQASKDIERQ RKLAEDQRNL VQQQAQAKAQ NLRYEDELAR KRMQTDNEAQ RRHNAELVSM QEASSIRKEK ARIATEEQIQ
201: AQQRETEKER AELERETIRV KAMAEAEGRA HEAKLTEEQN RRMLLDKING EREKWLAAIN TTFSHIEGGV RTLLTDRSKL IMTVGGVTAL AAGVYTTREG
301: ARVTWGYINR ILGQPSLIRE SSMGRFPWAG SVSQFKNKLS TAAGAAASAE GEKPLENVIL HRSLKTRIER LARATANTKS HKAPFRNMMF YGPPGTGKTM
401: VAREIARKSG LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR SALNALLFRT GDQSRDIVLV LATNRPGDLD
501: SAVTDRIDEV IEFPLPGEEE RFKLLKLYLN KYLMGDDKKG EKDSNLKWSN LFKKKKSQKI TIEGDLTDQV IKEAAKKTEG FSGREIAKLV AGVQAAVYGR
601: QDCVLDSQLF EEIVDYKIEE HHQRIRLATE GGQSFP

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.