Factsheet for VIT_04s0023g01900.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040085	Potato	extracellular	46.41	81.74
Solyc02g062700.2.1	Tomato	nucleus	80.06	78.44
KRH28685	Soybean	nucleus	78.15	77.65
KRH76781	Soybean	nucleus	77.19	77.32
CDY36475	Canola	plastid	77.35	76.98
AT2G18330.1	Thale cress	plastid	76.24	75.16
AT4G36580.1	Thale cress	plastid	75.28	74.68
CDY64607	Canola	plastid	70.81	74.37
Bra011692.1-P	Field mustard	plastid	70.97	74.29
CDX69234	Canola	cytosol, plastid	70.81	74.25
GSMUA_Achr10P...	Banana	mitochondrion, plasma membrane	73.68	73.45
CDY30315	Canola	plastid	75.76	71.75
Zm00001d051572_P001	Maize	mitochondrion	65.07	67.44
VIT_16s0039g02110.t01	Wine grape	plasma membrane	67.46	67.04
EES07394	Sorghum	mitochondrion	63.8	66.12
CDY51218	Canola	plastid	75.6	66.11
Bra037225.1-P	Field mustard	plastid	75.6	65.65
Os02t0706500-01	Rice	mitochondrion	64.27	65.42
TraesCS6D01G253600.1	Wheat	mitochondrion	62.2	63.93
TraesCS6A01G273800.1	Wheat	mitochondrion	61.88	63.71
Zm00001d017783_P002	Maize	mitochondrion	62.84	63.65
TraesCS6B01G300900.1	Wheat	mitochondrion	61.72	63.44
HORVU6Hr1G069110.2	Barley	plastid	58.05	56.79
VIT_10s0116g00260.t01	Wine grape	cytosol	9.41	23.51
VIT_10s0116g00330.t01	Wine grape	mitochondrion	15.95	16.78

Protein Annotations

EntrezGene:100263248	wikigene:100263248	Gene3D:3.40.50.300	MapMan:35.2	InterPro:AAA+_ATPase	InterPro:ATPase_AAA_CS
InterPro:ATPase_AAA_core	ProteinID:CCB44443	ProteinID:CCB44443.1	ncoils:Coil	InterPro:DUF3523	UniProt:F6GWV7
EMBL:FN594959	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0007005	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	EntrezGene:LOC100263248	wikigene:LOC100263248	InterPro:P-loop_NTPase	PFAM:PF00004
PFAM:PF12037	ScanProsite:PS00674	PANTHER:PTHR23075	PANTHER:PTHR23075:SF3	SMART:SM00382	SUPFAM:SSF52540
SignalP:SignalP-noTM	UniParc:UPI00015CADCF	ArrayExpress:VIT_04s0023g01900	EnsemblPlantsGene:VIT_04s0023g01900	EnsemblPlants:VIT_04s0023g01900.t01	RefSeq:XP_002266534
RefSeq:XP_002266534.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:18459676..18488007

Molecular Weight (calculated)

69989.2 Da

IEP (calculated)

9.411

GRAVY (calculated)

-0.591

Length

627 amino acids

Sequence
(BLAST)

001: MAASRLSSCV AMAAAVAFFS KASSGAYADG PFRFSPFSSS PPQTSQSSVE KSEDKSEADE PRVSSSGFDP ESLERGAKAL REINSSPNAK QVFEIMRKQE
101: QTRLAELAAE KAHQEAIQAQ ADIDKQRKMA EEQMNLVQQQ AQAKAQMLRY EDELARKRMQ TDHEAQRRHN VELVKMQEES SIRKEQARRA TEEQIQAQQR
201: QTEKERAEIE RETIRVKAMA EAEGRAHEAK LTEDHNRRML IERMNGEREK WLAAINTMFS HIEGGFRVLL TDRNKLLMAI GGATAVAAGV YTTREGARVT
301: WGYINRILGQ PSLIRESSIA KFPWSGMVSR GTNKVLNYST AAGGARPGEN KTSFGNIILH PSLQRRIEHL ARATSNTKSH QAPFRNMLFY GPPGTGKTMV
401: AREIARKSGL DYAMMTGGDV APLGAQAVTK IHQIFDWAKK SNKGLLLFID EADAFLCERN STRMSEAQRS ALNALLFRTG DQSREIVLVL ATNRPGDLDS
501: AVTDRIDEVI EFPLPGEEER FKLLKLYLDK YLSDEGQSTS KWNPLSKSKP QKVTIKDVSE DVIREAARKT EGFSGREIAK LMAGIQAAVY GRPDCVLDSQ
601: LFMEIVDYKV AEHHQRLKLV AEGGHPA

Best Arabidopsis Sequence Match ( AT2G18330.1 )
(BLAST)

001: MAASRLCSAA AIAAAFTSMS MSQNRAYADS RFRFPFFSSS PPAEESPTDH KSSSNSKSET KPDSDEPKGS GFDPESLERG AKALREINSS PHSKQVFDLM
101: RKQEKTRLAE LAAEKEHNEA IQASKDIERQ RKLAEDQRNL VQQQAQAKAQ NLRYEDELAR KRMQTDNEAQ RRHNAELVSM QEASSIRKEK ARIATEEQIQ
201: AQQRETEKER AELERETIRV KAMAEAEGRA HEAKLTEEQN RRMLLDKING EREKWLAAIN TTFSHIEGGV RTLLTDRSKL IMTVGGVTAL AAGVYTTREG
301: ARVTWGYINR ILGQPSLIRE SSMGRFPWAG SVSQFKNKLS TAAGAAASAE GEKPLENVIL HRSLKTRIER LARATANTKS HKAPFRNMMF YGPPGTGKTM
401: VAREIARKSG LDYAMMTGGD VAPLGAQAVT KIHEIFDWAK KSNKGLLLFI DEADAFLCER NSTYMSEAQR SALNALLFRT GDQSRDIVLV LATNRPGDLD
501: SAVTDRIDEV IEFPLPGEEE RFKLLKLYLN KYLMGDDKKG EKDSNLKWSN LFKKKKSQKI TIEGDLTDQV IKEAAKKTEG FSGREIAKLV AGVQAAVYGR
601: QDCVLDSQLF EEIVDYKIEE HHQRIRLATE GGQSFP

Arabidopsis Description

AAA-type ATPase family protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPW5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.