Factsheet for PGSC0003DMT400055267

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g036340.2.1	Tomato	nucleus	59.11	35.28
KRH63149	Soybean	cytosol	18.22	29.71
CDY71527	Canola	mitochondrion	16.44	14.07
VIT_10s0116g00330.t01	Wine grape	mitochondrion	28.44	10.74
CDX83073	Canola	endoplasmic reticulum	14.67	8.68
KRH11495	Soybean	mitochondrion	21.78	8.55
Os02t0740300-01	Rice	mitochondrion	21.78	8.02
Bra029485.1-P	Field mustard	mitochondrion	20.0	7.69
TraesCS6A01G311400.1	Wheat	mitochondrion, plastid	19.56	7.43
KXG30792	Sorghum	mitochondrion	19.11	7.33
HORVU6Hr1G076750.17	Barley	mitochondrion	19.11	7.29
TraesCS6D01G290700.1	Wheat	mitochondrion	18.67	7.08
AT4G04180.1	Thale cress	mitochondrion	18.22	6.83
TraesCS6B01G341600.1	Wheat	cytosol, plastid	18.67	6.55
CDX94544	Canola	mitochondrion	16.89	6.24
PGSC0003DMT400040085	Potato	extracellular	4.44	2.81
GSMUA_Achr7P19880_001	Banana	cytosol	4.44	2.63
PGSC0003DMT400008178	Potato	cytosol, mitochondrion, peroxisome	1.33	2.61
Bra029941.1-P	Field mustard	cytosol	2.22	2.44
GSMUA_Achr10P...	Banana	cytosol	2.22	1.26
CDX68520	Canola	cytosol	0.44	0.65
VIT_10s0116g00260.t01	Wine grape	cytosol	0.44	0.4
PGSC0003DMT400055268	Potato	cytosol	0.0	0.0
PGSC0003DMT400008177	Potato	cytosol	0.0	0.0
KRH36514	Soybean	cytosol	0.0	0.0
CDY16678	Canola	cytosol	0.0	0.0
Zm00001d007450_P001	Maize	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400055267	EnsemblPlantsGene:PGSC0003DMG401021461	PANTHER:PTHR23073	PANTHER:PTHR23073:SF29	PGSC:PGSC0003DMG401021461	SEG:seg
UniParc:UPI000296E6F0	UniProt:M1BXP5	MapMan:35.2	:	:	:

Description

26S protease regulatory subunit [Source:PGSC_GENE;Acc:PGSC0003DMG401021461]

Coordinates

chr2:-:17707683..17710423

Molecular Weight (calculated)

24551.7 Da

IEP (calculated)

9.970

GRAVY (calculated)

-0.101

Length

225 amino acids

Sequence
(BLAST)

001: MASIRRLARA LHSHYRTLAS PSLYQSPNLP HNGIFGCHRR TFFSRSVPST TIPAILAGLL GVGVLNVAYA DSDEVGAKVP PYDSLPIPSH NPLEETAKRE
101: RLRLENLLKS KGVKYGSYPR FTVAVKGQKV TIKFQVPPTC EIPLLIASLV SRLGVKLEDS SAASNMMLHA WDSGVAWKLA LSRPQTKNGT AGEQAGGRDT
201: NPFDEDLCIL IFHPLISADK AVHFL

Best Arabidopsis Sequence Match ( AT4G04180.1 )
(BLAST)

001: MAILDKLFRA SRAWRGSLSH SKSMVPSQSP RARELRRCFH HGNFEQSNSK VNQVLRSCST LNDSPYFSMA PAVLGALFSV GVIGVAYAES DEANNDKSSA
101: PIDPNDETSS APIDPPPNYV DIAKKERARV EELIQSKGTQ YGSYPRFNVA VRGQKITLKF QVPSTCEVAQ LISNIGSQLG VKVSDRTGGS DMLLRAWDNP
201: VAWQITLRSV ENKKKLGESE DDSDDDLCIL IFGSLLTSDK VEVEFIKKGS LTTEELEAFV SALGVAGTKA GQNKGSGSRG STRDSSTDKS ISQLESMGVR
301: IYGVNKPLGD DSMDEISWDN IAGYDQQKRE IEDTILMALH SPEVYDDIVR GTRSKFESNR PRAVLFEGPP GTGKTSCARV IANQAGIPLL YVPLEAVMSK
401: YYGESERLLG AVFSQANELP DGAIIFLDEI DAFAISRDSE MHEATRRVLS VLLRQIDGFE QEKKVVVIAA TNRKQDLDPA LISRFDSMIM FDLPDLQTRQ
501: EIIAQYAKQL SKPELVQLAQ ATEAMSGRDI RDVCQGAERT WASKLIRRAK AGGEEQKITL PPIQEYLESA EARRKSLRSV TEQKEQKFAA RSKKPLLDFE

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT4G04180]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.